Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01505 ATGACTCAAGCGAAGACTATGAGCTTCGTGTGGACCCCACTCTTTAATGAACCTTCCCTTACTCTACCCATCGCACTTAACTTAAATTCATCCTCTCCTCGCTCCTCTCTCACATCTCTCCCACCACCACCCATGGAAACCACTCGCCAAAACGGACCAATATTATGTCGTTTTTTTCTTTATCTCTTCTTCTTTATGCTTCCGCTGGCGGCGGCGCAACCGGGAACGACCGACCAAAATGAATCTTCCTATTACAACCGCTTCAGCCCCTCCATGGCCATCATAATCGTCATCCTCATCGCGGCCTTGTTTCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCTCCGACTCCCCCTCCGCCAGCATCCGCAACCTCGCCGCCGCTGCCGGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGGTCCAGGCGCGCCTCGCGAGGCCTCGACGCCGCCGTCATCGCCACCTTCCCCACGCTCGAGTACTCCGCGGTCAAGATCCACAAGATCGGAAAGGGGACCCTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTCTTCCACCCTGAGTGCATCGACGAGTGGCTTGGCTCCCACACCACGTGCCCCGTTTGCCGCGCCAATCTCGTTCCCGAGCCCGGTGAGTCCCTCCACGGCCTTCCGATTTTCCCCGACGTCCAAGCCCAACAGAGCGAGGCCCAAACCGAGGCCCAACTCGACCCCGTCCAGCCCCCCGCCCCTGAACTTAAAGACTCCACGGAAGAACCCCCGCAGGTCTTGTGCTTGAACCAGACGCTGAACCGGAACCGCACCAGAGGATCCCGGTCGGGCCGCCCTCGTCGTTTCCCGCGTTCTCACTCGACCGGTCATTCTCTTATCCAACCGGGCCAAGATACCGAACGGTTCACTCTAAGGCTTCCCGAGGAAGTAAGAAAACAAATACTACTGAACCCTCAGTTGCAACGGGCGAGAAGTTTGGTTATCTTACCGACAGAGAGTAGTTCGCGGCGGGGTTACCGAACCGGCGAGGGAAGTAGTCGAGGAAGGTCTTCGAGGCTTTTGGACCGGGGATTTAAGTCGGACCGGTGGGTTTTCACGATGGCGCCGCCTTTCTTAGTTAGAGCATCGTCAATTAGGTCTCCCAGGGTGGCGAATAAcgccgccgacgcgggaacctccgctgcgccgccgccgccgccgccTACTGTGGAATCTGTTTGA 1389 0.4932 MTQAKTMSFVWTPLFNEPSLTLPIALNLNSSSPRSSLTSLPPPPMETTRQNGPILCRFFLYLFFFMLPLAAAQPGTTDQNESSYYNRFSPSMAIIIVILIAALFLMGFFSIYIRHCSDSPSASIRNLAAAAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRRASRGLDAAVIATFPTLEYSAVKIHKIGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPEPGESLHGLPIFPDVQAQQSEAQTEAQLDPVQPPAPELKDSTEEPPQVLCLNQTLNRNRTRGSRSGRPRRFPRSHSTGHSLIQPGQDTERFTLRLPEEVRKQILLNPQLQRARSLVILPTESSSRRGYRTGEGSSRGRSSRLLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANNAADAGTSAAPPPPPPTVESV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01505 462 SMART ring_2 220 261 IPR001841 -
Cca02g01505 462 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 58 133 - -
Cca02g01505 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 267 IPR013083 -
Cca02g01505 462 SUPERFAMILY RING/U-box 216 268 - -
Cca02g01505 462 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 183 407 - -
Cca02g01505 462 PANTHER RING FINGER DOMAIN-CONTAINING 183 407 - -
Cca02g01505 462 MobiDBLite consensus disorder prediction 286 356 - -
Cca02g01505 462 Pfam Ring finger domain 219 262 IPR001841 -
Cca02g01505 462 ProSiteProfiles Zinc finger RING-type profile. 220 262 IPR001841 -
Cca02g01505 462 MobiDBLite consensus disorder prediction 433 462 - -
Cca02g01505 462 MobiDBLite consensus disorder prediction 313 328 - -
Cca02g01505 462 CDD RING-H2_EL5_like 219 262 - -
Cca02g01505 462 Coils Coil 184 184 - -
Cca02g01505 462 PANTHER RING FINGER DOMAIN-CONTAINING 58 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01505 Cca-Chr2 33614567 33615955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01505 58 440 Rapid Response to Elicitors AT3G05200 41.860 1.00e-84 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01505 K10664 - gmx:100810865 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01505 02 33614567 33615955 Cca02g01505 02 33614567 33615955 ECH
Cca03g02964 03 51028823 51029623 Cca02g01505 02 33614567 33615955 PCT