Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01500 ATGGATCATCAAGGGCATGGACATGGCCAGAACCCATCTATGGGAGTTGTTGGAAGTGGACCTCAACTTACTTTTGGTTCTAATCCATATCAGACCAGCCATTTAACAGGTTCACCTGGGATGGTTGTTGCATCACCAGGGACCATTCAATCCACTGGTCAACCACCAGCAACTCAGCTAGGACAACAATATCAACTTGCTAATcagcacattcatcagcaacaacagcagcaactgcagcaACGGCTCCAAGCCTTTTGGGCAAACCAATATCAAGAAATTGAGAAGGTAACTGACTTCAAGAACCACAGCCTTCCCTTGGCCAGGATCAAAAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTGGAGTTAACCTTGCGTTCTTGGAACCACACTGAAGAGAACAAAAGGAGAACCCTTCAAAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTTTTGGTCGACATTGTGCCAAGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATGCCAAGAGGAACTGTGCCTGTTACAGGGCCTGCTGAGGCACTTCCTTATTGCTATATGCCCCCTCAACATGCACAGCAAGTTGGAACTGCTGGTGTTATAATGGGTAATAAGCCTGTGATGGACCCTTATGCTCAACAGTCTCATCCCTACAACATGGCACCACAAATGTGGCCACAACCACCAGACCAACAACAATCTTCTCCAGATCAGTAG 792 0.4293 MDHQGHGHGQNPSMGVVGSGPQLTFGSNPYQTSHLTGSPGMVVASPGTIQSTGQPPATQLGQQYQLANQHIHQQQQQQLQQRLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASMPRGTVPVTGPAEALPYCYMPPQHAQQVGTAGVIMGNKPVMDPYAQQSHPYNMAPQMWPQPPDQQQSSPDQ 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01500 263 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 263 - -
Cca02g01500 263 SUPERFAMILY Histone-fold 66 176 IPR009072 GO:0046982
Cca02g01500 263 MobiDBLite consensus disorder prediction 1 58 - -
Cca02g01500 263 MobiDBLite consensus disorder prediction 241 263 - -
Cca02g01500 263 Pfam Core histone H2A/H2B/H3/H4 64 167 IPR007125 GO:0003677
Cca02g01500 263 MobiDBLite consensus disorder prediction 15 58 - -
Cca02g01500 263 Gene3D Histone, subunit A 66 182 IPR009072 GO:0046982
Cca02g01500 263 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 263 - -
Cca02g01500 263 MobiDBLite consensus disorder prediction 236 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01500 Cca-Chr2 33569492 33571310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01500 1 229 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.174 7.21e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca02g01500 Histone 3.6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01500 K08066 - gmx:100785287 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01500 02 33569492 33571310 Cca02g01500 02 33569492 33571310 ECH
Cca03g02959 03 50987710 50990407 Cca02g01500 02 33569492 33571310 PCT