Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01481 ATGTTTCATAACCTCGTGAACGCTTTGAGCGGTGACGACGAAAAGCGTCAGCGAGTGAAAGGAAGGGTGGTGCTGATGAAGAAGAATGTGTTGGACTTCAACGATTTCAGTGCCTCGTTCCTGGATCGTCTTCACGAGTTTTTGGGAAAACGAGTTTCTCTTCAGCTCGTAAGTGCTGTCAAAGTTGACCCTGCCAATGACAATGGCTTGAAGGGGAAACTTGGGAAGCCTGCTTATCTAGAAGACTGGATTACATCAATCGCACCTTTGACAGCGGGAGAAACAGCATTCAGTGTTACATTTGATTGGGAAGAGGATATAGGAACACCAGGAGCCTTTATAATAAGGAACAATCATCACAGTGAGTTCTACCTCAAAAGCCTGACACTTGAAGATGTTCCAGGCCAAGGTGTCATTCGATTTGTCTGCAACTCTTGGGTATACCCTGCTGATAAATACGAAAAGGATCGCATTTTCTTCTCCAACAAGACATATCTTCCGAGTGAAACACCAGAGCCATTGCTTAAGTACAGAGAAGAAGAATTGGAGAACTTAAGAGGTCATGGAAAGGGCCAGCTCCAAGAGTGGGACAGGGTCTATGATTATGCTTACTACAATGATTTGGGAAATCCGGATAAGGGTCCACAACATGCTCGTCCTCTTCTAGGAGGATCTAAGGAATACCCCTACCCTCGTAGGGGAAGAACTGGAAGACCACCTGCAAAAGCAGATCCTAATTCCGAGAGTAGGTTGGATTTGACCAAGAGCTTAGACATCTATGTACCAAGGGATGAAAGATTTGGTCACTTGAAGCTATCAGATTTTCTTGTCTATGCACTGAGATCCATAGTTCAAGTTCTCAAACCGGAGTTGGAATCTCTATATGATAGCACCCCCAATGAGTTTGACAGTTTTGAAGATGTGTTTAAACTCTATGAAGGTGGGATTGAGGTGCCTGAGGGTTTACTTAAGGAAGTTAGGGACAACATCCCTGCAGAGATGCTTAAGGAAATTTTCCGAACTGATGGCCAAAGGTTCCTTAAATTTCCCGTGCCTCAAGTGATTGCAGAGGATAAATCTGCATGGCAAACTGATGAAGAATTTGCTAGGGAGATGCTGGCTGGTATAAACCCTGTGGTAATTCGTCGTCTCCAGGAGTTCCCACCAGCTAGCAAGCTAGATCCTAAACTCTATGGTAATCACTCAAGTACAATAACCAAAGAACACATCGAAAGCAACCTGGAAGGGCTCACCGTAGATGAGGCATTAAAAGAAAGGAGGTTGTTCATTTTAGATCTCCACGATGCACTGATTCCATACATGAGGAGGATAAACTCTACTTCTACGAAGACATATGCCAGCAGAACAATTCTGTTCTTGCAAAATAATGGAACTTTAAAGCCACTAGCCATTGAGTTGAGTTTGCCTCATCCGGATGGAGATCAATTCGGTGCCATTAGTAAAGTTTACGTGCCTGCGGAACAAGGCGTTGACCATTCCCTCTGGCAACTGGCCAAAGCTTATGTAGTGGTAGTGGACTCAGGCTATCATCAACTTATCAGCCACTGGTTGCATACTCATGCTGTCATTGAGCCATTCATTATAGCTACAAATAGGCAACTTAGTGTGCTTCACCCTATTCATAAGCTATTGCATCCTCACTTTCGTGACACCATGAATATCAATGCACTTGGAAGGCAGATTCTCATCAATGGAGGTGGTGCTCTTGAGACAACAGTTTGTCCGTCTAAGTATTCTATGGAGCTTTCATCTGTGATTTATAAGGACTGGGTTTTCCTTGAGCAGGCTCTACCTGAAGATCTTCTCAAGAGAGGAGTGGCTGTTAAGGACTCAACTTCTCGTCATGGCATTCGACTATTGATTGAGGATTACCCTTTTGCGGTTGATGGACTAGAGATTTGGTTTGCCATCAAGACATGGGTTCAAGACTACTGCTCCTTTTACTACAAGGAGGATGACACAGTCAAGAAAGACACAGAACTTCAATCTTGGTGGAAGGAAATAAGGGAGGTGGGTCATGGTGACAAGAAACATGAACCTGGGTGGCCAAAGATGCAGACATGTGAAGATCTGATTGAGACTTGCACTATCATTATCTGGATTGCGTCAGCTCTCCATGCTGCAATCAACTTTGGACAATACCCTTATGGAGGCTTCCCACCAAGTCGTCCAGCTATAAGCAGGAGATTCATGCCAGAAAAAGGAACTCCAGAATACGATGAACTAGTGACAAATCCTGAGAAGGCCTATCTGAAAACAGTTAGTTCACACTTTCAGGGTGTTCTTGGCATTTCACTTGTGGAAATCTTGTCCAAACATTCCAGTGATGAGGTCTACCTTGGGCAGAGAGACTCTCCAGATTGGACATCTGATGCAGAGGCATTACTAGCCTTTCAGAAGTTTGGCAACAAACTTGCTGATATTGAGGAAAGGATCATGAAAATGAACAGTGATGAGAGGTTCAGAAACCGCTATGGTCCAGTTAAGATGCCATACACCCTGCTTTATCCTTCAAGCCAAGGTGGACTAACTGGCAAGGGGGTTCCTAATATGCGAAAAATCTCATTGGCTAGTGCCCCTACTTATATTCAAGTTTCGCGGCAATGCGTTTCTCTTTACCTCTCTCTTTCTAAACCCTGCCACTTCTTTTCTTCCTCTTCCTTCACCGGGAATCGGCTAAACCCTACCATCGACACAAGGAAAGATGGAGTTAATTCAAATAAAAACAAGCAACGGAAGAAAAAGTTGACTGATAAATTAGGATCTCAATGGAGCAAGGAGGAACTAGAGCGATTTTATGAAGCATATAGGAAGTATGGGAAAGATTGGAAGAAGGTGGCTGCTGTTGTACGTAATAGATCTGCTGAAATGGTAGAAGCTCTTTACAATATGAATCGGGCATACCTCTCTCTGCCAGAGGGTACAGCTTCTGTTGTTGGCCTTGTGGCAATGATGACGGATCATTACAATGTGCTGGAAGGGAGTGACAGTGAAAGGGAAAGCAATGATGCACCAGGATCTCGGAAACCTGTTAAACGAAAGCGTGAAAAAGTTCAGCTTAGTGTCTCTAAAGATCCAGTCCAGTCTCACTCATTTGCTTCCAGTGATGACTGCCTCTCTCTTTTGAAAAAGAGGTGCTTTGATGGTAAGCTGCCTGTTGGTAAAAGGACTCCTCGTGTCCTAGTTAAGAAAGATGAGACAGAAAATTATGTTTCGCCCTATAGAAGAAGCCTGAAGTCTACTGTAGATGCTAATGATGATGAGGTTGCACATGTTGTAGCGTTGACATTAACTGAGGCTTCACAAAGAGGAGGCTCCCCCCAAGTTTCTCAATCACCATATAGAAGAGTAGAGCGAAATTCCTCTCCTGTCCAGAGCTGGGGAAGAAAGCACAAAATGTCAGGGACAGCTCGTGCCAAGTTTCATGATGTTTCTGCAGATGAAGAGTTCTTAGAATGTAGTGTCAGTGTTGAAAGCAGGGGAGCTGAAAATGGAGAATATGCAAGAGATAATAGTTCATTGATGGATATGGAGGGCATAGGCGCTGTTGAAGTTCATCATAAGGGGGAGAAATTTTACAGAAAGAGAGAGAGAGTGAAAATTGTTGGAAGCCATCAGCTTGATGATGGTGGGGAAGCATGTAGCGGCACTGAAGAAGGACTTAGTTTTAGTTCACAAAAGGAAAAGGTTGATATTGAGGTTACTAATGACAAACTTGAAAAATTCTCTCCAAATGGTCAAAGGAAAAGAAACAAGAAACTCTTCTTTGGAGATGAAACCCCTTCCTTGAATGCTTTGCAAACATTGGCAGATCTTTCTCTAATGATGCCAACATCTAAATTAGAATCTGAATCATCTATCCAGTTGAAGGGAGAAAGAATGGCTGCTGATAAAGACGAAAAGTCTGCTTTACGTGAAGCAACATCAATCAGCCATAAGAAACATAAACTTAAACACTGTGTGGTCCCTGAAATTGAGGTTTCAACCTCGAAAAAGTCTAAGCTTGGAAAGGAATTGACAAAGACTACAAATGCTCTCTCCGAATCAAAAGAGCAGCTTCCCTTTGCTGATACAATATTGAAAAGAAAGCGGAAGTCTATGGGTTCAAAGGTTGCGAGTGCAAAGCTTGATTCTTATCCAAGTGGTCCCTTGAAAGATGGGGCTTTAGATGATGAGAATAAACTAGTCGTTAAAGGAAAACACACTGATCAGGTTCTTCCCCTACCAAAGCAATTAAAGATAGTTAAGTCATCAGAGAGTTCTGTGTGTTCTGAACAGAAAGATTTGACAGTATCAGCCGCAGAAGTTCCACTTTTGAATGAAGTTAGTATACCAACTAAACGAAGTAGACGGAAGATTATTTTACAGAGAACATCCTTGCCAAAGGAAAAGTCTTCTGACTACATATTGAAAAGTCAACCTAATAAGTACTATACCCTAAGGGAAAAGCTTTCTAGTTGCTTGTCATCCAATATGGTTCGCAGATGGTTTATTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTCATGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGGTTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCCCGCAGGTTTTCTGAACACTTTCTACGTGAAGAAAGACAAAAACTTGAACAATATCGGGAATCAGTTAGGAAACATTACACTGAACTGCGGACTGGTGCTAGGGATGGACTTCCAACAGATTTAGCTAGACCATTATATGTTGGACAGCGAGTAATTGCTCTTCATCCAAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACTGTTGACTATGACAAGTGCAGGATTCAGTTTGACCGTCCTGAATTGGGTGTTGAATTTGTAATGGAAGTAAGAAAACAAATACTACTGAACCCTCAGTTGCAACGGGCGAGAAGTTTGGTTATCTTACCGACAGAGAGTAGTTCGCGGCGGGGTTACCGAACCGGCGAGGGAAGTAGTCGAGGAAGGTCTTCGAGGCTTTTGGACCGGGGATTTAAGTCGGACCGGTGGGTTTTCACGATGGCGCCGCCTTTCTTAGTTAGAGCATCGTCAATTAGGTCTCCCAGGGTGGCGAATAAcgccgccgacgcgggaacctccgctgcgccgccgccgccgccgccTACTGTGGAATCTGCATTGTCTTTGACAAAGGAAGGTGAAGATGTATTCATGAAGATTGGGCAGGCATTGGATTCTATTAATCACCAACAATTGGCCTCTGTGTCTAGATTACCTGTGATCAGATCTCAAGAACAAGTGAATGTGAATGGCAGTTTTTATCATAATAATCATTCAACTTGCTTTGTATCAGAGTCTTTACTTAATGATCCATCTGGTCAAAAACTACATAATTATTCTGACAAATTTGATACTGAAATTCCATCAGAGCTTATCACTTCATGTGTTGCTACATTAATCATGATTCAGACATGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCCGTTACGAGTCTGCATCCATGCTGTCCTCGAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAGACCCAGATTTTAGCTCTCATCCCTACTTGA 5676 0.4223 MFHNLVNALSGDDEKRQRVKGRVVLMKKNVLDFNDFSASFLDRLHEFLGKRVSLQLVSAVKVDPANDNGLKGKLGKPAYLEDWITSIAPLTAGETAFSVTFDWEEDIGTPGAFIIRNNHHSEFYLKSLTLEDVPGQGVIRFVCNSWVYPADKYEKDRIFFSNKTYLPSETPEPLLKYREEELENLRGHGKGQLQEWDRVYDYAYYNDLGNPDKGPQHARPLLGGSKEYPYPRRGRTGRPPAKADPNSESRLDLTKSLDIYVPRDERFGHLKLSDFLVYALRSIVQVLKPELESLYDSTPNEFDSFEDVFKLYEGGIEVPEGLLKEVRDNIPAEMLKEIFRTDGQRFLKFPVPQVIAEDKSAWQTDEEFAREMLAGINPVVIRRLQEFPPASKLDPKLYGNHSSTITKEHIESNLEGLTVDEALKERRLFILDLHDALIPYMRRINSTSTKTYASRTILFLQNNGTLKPLAIELSLPHPDGDQFGAISKVYVPAEQGVDHSLWQLAKAYVVVVDSGYHQLISHWLHTHAVIEPFIIATNRQLSVLHPIHKLLHPHFRDTMNINALGRQILINGGGALETTVCPSKYSMELSSVIYKDWVFLEQALPEDLLKRGVAVKDSTSRHGIRLLIEDYPFAVDGLEIWFAIKTWVQDYCSFYYKEDDTVKKDTELQSWWKEIREVGHGDKKHEPGWPKMQTCEDLIETCTIIIWIASALHAAINFGQYPYGGFPPSRPAISRRFMPEKGTPEYDELVTNPEKAYLKTVSSHFQGVLGISLVEILSKHSSDEVYLGQRDSPDWTSDAEALLAFQKFGNKLADIEERIMKMNSDERFRNRYGPVKMPYTLLYPSSQGGLTGKGVPNMRKISLASAPTYIQVSRQCVSLYLSLSKPCHFFSSSSFTGNRLNPTIDTRKDGVNSNKNKQRKKKLTDKLGSQWSKEELERFYEAYRKYGKDWKKVAAVVRNRSAEMVEALYNMNRAYLSLPEGTASVVGLVAMMTDHYNVLEGSDSERESNDAPGSRKPVKRKREKVQLSVSKDPVQSHSFASSDDCLSLLKKRCFDGKLPVGKRTPRVLVKKDETENYVSPYRRSLKSTVDANDDEVAHVVALTLTEASQRGGSPQVSQSPYRRVERNSSPVQSWGRKHKMSGTARAKFHDVSADEEFLECSVSVESRGAENGEYARDNSSLMDMEGIGAVEVHHKGEKFYRKRERVKIVGSHQLDDGGEACSGTEEGLSFSSQKEKVDIEVTNDKLEKFSPNGQRKRNKKLFFGDETPSLNALQTLADLSLMMPTSKLESESSIQLKGERMAADKDEKSALREATSISHKKHKLKHCVVPEIEVSTSKKSKLGKELTKTTNALSESKEQLPFADTILKRKRKSMGSKVASAKLDSYPSGPLKDGALDDENKLVVKGKHTDQVLPLPKQLKIVKSSESSVCSEQKDLTVSAAEVPLLNEVSIPTKRSRRKIILQRTSLPKEKSSDYILKSQPNKYYTLREKLSSCLSSNMVRRWFIFEWFYSAIDYPWFAKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLREERQKLEQYRESVRKHYTELRTGARDGLPTDLARPLYVGQRVIALHPKTREIHDGSVLTVDYDKCRIQFDRPELGVEFVMEVRKQILLNPQLQRARSLVILPTESSSRRGYRTGEGSSRGRSSRLLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANNAADAGTSAAPPPPPPTVESALSLTKEGEDVFMKIGQALDSINHQQLASVSRLPVIRSQEQVNVNGSFYHNNHSTCFVSESLLNDPSGQKLHNYSDKFDTEIPSELITSCVATLIMIQTCTERQYPPADVAQILDSAVTSLHPCCPRNLPIYREIQMCMGRIKTQILALIPT 1891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01481 1891 Gene3D - 361 494 - -
Cca02g01481 1891 MobiDBLite consensus disorder prediction 1107 1136 - -
Cca02g01481 1891 Pfam DIRP 1508 1609 IPR033471 -
Cca02g01481 1891 MobiDBLite consensus disorder prediction 1000 1035 - -
Cca02g01481 1891 Gene3D - 895 983 - -
Cca02g01481 1891 Gene3D - 271 360 IPR027433 -
Cca02g01481 1891 Gene3D - 495 859 - -
Cca02g01481 1891 SMART sant 927 975 IPR001005 -
Cca02g01481 1891 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Cca02g01481 1891 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Cca02g01481 1891 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Cca02g01481 1891 CDD PLAT_LH2 18 162 IPR042057 -
Cca02g01481 1891 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Cca02g01481 1891 PRINTS Plant lipoxygenase signature 229 248 IPR001246 GO:0016491
Cca02g01481 1891 PRINTS Plant lipoxygenase signature 157 178 IPR001246 GO:0016491
Cca02g01481 1891 PRINTS Plant lipoxygenase signature 196 212 IPR001246 GO:0016491
Cca02g01481 1891 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Cca02g01481 1891 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Cca02g01481 1891 PRINTS Plant lipoxygenase signature 347 363 IPR001246 GO:0016491
Cca02g01481 1891 PRINTS Plant lipoxygenase signature 299 320 IPR001246 GO:0016491
Cca02g01481 1891 PRINTS Plant lipoxygenase signature 386 405 IPR001246 GO:0016491
Cca02g01481 1891 SUPERFAMILY Homeodomain-like 925 974 IPR009057 -
Cca02g01481 1891 MobiDBLite consensus disorder prediction 901 926 - -
Cca02g01481 1891 Pfam Myb-like DNA-binding domain 929 966 IPR001005 -
Cca02g01481 1891 PANTHER LIPOXYGENASE 8 860 - -
Cca02g01481 1891 MobiDBLite consensus disorder prediction 211 249 - -
Cca02g01481 1891 Gene3D - 166 270 - -
Cca02g01481 1891 ProSiteProfiles PLAT domain profile. 19 161 IPR001024 GO:0005515
Cca02g01481 1891 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 164 861 IPR013819 GO:0016702|GO:0046872
Cca02g01481 1891 ProSiteProfiles Myb-like domain profile. 929 970 IPR001005 -
Cca02g01481 1891 PANTHER LIPOXYGENASE 8 860 IPR000907 GO:0016702|GO:0046872
Cca02g01481 1891 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 17 165 IPR036392 GO:0005515
Cca02g01481 1891 ProSiteProfiles SANT domain profile. 926 963 IPR017884 -
Cca02g01481 1891 Coils Coil 1561 1581 - -
Cca02g01481 1891 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Cca02g01481 1891 SMART DIRP_2 1509 1610 IPR033471 -
Cca02g01481 1891 SMART LH2_4 17 162 IPR001024 GO:0005515
Cca02g01481 1891 SUPERFAMILY Lipoxigenase 166 857 IPR036226 -
Cca02g01481 1891 CDD SANT 931 965 IPR001005 -
Cca02g01481 1891 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Cca02g01481 1891 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 925 965 IPR017930 -
Cca02g01481 1891 MobiDBLite consensus disorder prediction 910 926 - -
Cca02g01481 1891 MobiDBLite consensus disorder prediction 1718 1738 - -
Cca02g01481 1891 Pfam Lipoxygenase 174 844 IPR013819 GO:0016702|GO:0046872
Cca02g01481 1891 MobiDBLite consensus disorder prediction 1000 1028 - -
Cca02g01481 1891 Gene3D PLAT/LH2 domain 11 165 - -
Cca02g01481 1891 MobiDBLite consensus disorder prediction 1107 1140 - -
Cca02g01481 1891 Pfam PLAT/LH2 domain 61 160 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01481 Cca-Chr2 33433720 33455021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01481 1 861 Acyl Lipid Metabolism Gene Families AT1G55020 67.861 0.0 1253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca02g01481 Lipoxygenase 0 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01481 K15718 - ccaj:109812074 1870.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01481 02 33433720 33455021 Cca02g01481 02 33433720 33455021 ECH
Cca03g02942 03 50857356 50861329 Cca02g01481 02 33433720 33455021 PCT