Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01480 ATGCCTTTTTTCTCTCCCCGTTTTGTGGTGGCTGCTCCGGTGCTGAATTATCTATCGCGAAGTTCGGAGGATTCTTGTGGTGAATTGTTCCGATTGTTGGGGAGTGTTCTGAATTTGGTGAAGTTGTTGGAAGTGAAATTTCGGTGTGGCAAAATGTTCGGGAGAGGGCACGGGAGCGGTGGAGTTGCGGCACCGGTGGTGGTTCCGAAGCGTTTCGTTTGGCCTCATGGAGGGAGAAGGGTGTTTCTGAGTGGCTCTTTCACGAGGTGGTCGGCATTTATACCTATGTCACCGATTGAAGGATGCCCGACTGTATTTCAAGTTATTTGCAGCTTAACGCCAGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGCGGCATGATGAGCATCAGCCATTTGTAAGGGTGGACTATGGGATAGTGAATACTATTTATTTAGTGAGAGAACTAAATATTTTACCTCCTATCTTAAGTCTTGAAACCCCTGGTCGATCCCACATGGAGGTTGACAATGACGTCTTTGGGCATGTGGAAGCAAATCCAAGGATGTCAGAGTCTGATCTGCAGGTCTCTCAACACCATATATCTTTATTCTTGTCTACACATACTGCTTATGAGTTGGTTACTGAATCAGGCAAGGTTATTGCCTTGGATGTAACTTTACCAGTTAAGCAAGCATTCCATGCTCTTCATCAGGAGGGAATATCTATCGCTCCTGTATGGGATTCTAGCAAGTGTCAGTTTGTTGGAATGCTTAGTGCAATGGACTTCATTCTAATTCTAAAAGAGATGGGGAATCTTGGATCAAAGTTGACTGAAGAACAACTTGAGACACACACTATAGCAGCATGGAGGGAGGCAAAGATACAAGAATGCGGAACTGAAAGCAATGGGAAAAAATACCCTCGACGTTTTATTCAAGCTGGGCCCCAGGAGTGTCTAAAAGATGTTGCTTTAAAAATTTTGCAAAATAAGGTGGCAACAGTTCCTATTATTCATTCTTCTTCAGAGGATGGTTATTTTCCTCAGCTACTACAGCTTGCTTCCCTCCCAGGAATACTAAAATGTATATGCAGGCATTTTAAGCACTCTTCTGATTCCTTGCCCATTCTTCAGCTACCAATTGGTTCGGTACCTGTAGGTACATGGGTGTCAAAAAGGGGGGAATCCAAAAAAAAGCCACTTGCTATGCTAAGGCCAAATGCTTCTCTTGGTGATGCTTTGTCTCTTATGATTCAAGCTGAAGTTAGCTCAATACTGATTGTGGATGATAATGATTCGTTACTTGATATATATTCAAGAAGAGATATTATTTCATTGGTTAAACATAATGCGTATGCAAGGATAAGTCTGGATGGGTTTAGTATCCATCAGGCATTGCTTTTGGGACGATATGCAAACTTCCCTTACGGTCTTCGCAATGGCCAGAGATGTCACATCTGTATGAGGTCTGACGCATTGCACAAAGTGATGGAGCGGTTGGCAAATCCTGATGTTGGACGACTTGTGGTTGTGGAAGCGGGAAGCAGGCGTGTGGAAGAAATCAAGGAGGAAAGAGTAAAATATTTAGCCGTATGCGGCACACCGTTGGCTGGTTGCAACTTGCAAGTAAAAGGTACTTCCTTCAGGTTCAAATGTTCAATTATCATTCCAGATTTTTCTCATAACCGGTTTGCTTGCATTTTAATGAATTCGTCTTTTCCTAATCTAGCAATTGGCAAATGGGTAGGACCGTAA 1743 0.4303 MPFFSPRFVVAAPVLNYLSRSSEDSCGELFRLLGSVLNLVKLLEVKFRCGKMFGRGHGSGGVAAPVVVPKRFVWPHGGRRVFLSGSFTRWSAFIPMSPIEGCPTVFQVICSLTPGYHQYKFNVDGEWRHDEHQPFVRVDYGIVNTIYLVRELNILPPILSLETPGRSHMEVDNDVFGHVEANPRMSESDLQVSQHHISLFLSTHTAYELVTESGKVIALDVTLPVKQAFHALHQEGISIAPVWDSSKCQFVGMLSAMDFILILKEMGNLGSKLTEEQLETHTIAAWREAKIQECGTESNGKKYPRRFIQAGPQECLKDVALKILQNKVATVPIIHSSSEDGYFPQLLQLASLPGILKCICRHFKHSSDSLPILQLPIGSVPVGTWVSKRGESKKKPLAMLRPNASLGDALSLMIQAEVSSILIVDDNDSLLDIYSRRDIISLVKHNAYARISLDGFSIHQALLLGRYANFPYGLRNGQRCHICMRSDALHKVMERLANPDVGRLVVVEAGSRRVEEIKEERVKYLAVCGTPLAGCNLQVKGTSFRFKCSIIIPDFSHNRFACILMNSSFPNLAIGKWVGP 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01480 580 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
Cca02g01480 580 Gene3D Immunoglobulins 66 150 IPR013783 -
Cca02g01480 580 ProSiteProfiles CBS domain profile. 393 450 IPR000644 -
Cca02g01480 580 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 59 517 - -
Cca02g01480 580 Pfam Glycogen recognition site of AMP-activated protein kinase 68 151 IPR032640 -
Cca02g01480 580 CDD E_set_AMPKbeta_like_N 71 149 - -
Cca02g01480 580 Pfam CBS domain 395 444 IPR000644 -
Cca02g01480 580 SUPERFAMILY CBS-domain pair 394 510 IPR046342 -
Cca02g01480 580 SUPERFAMILY CBS-domain pair 195 365 IPR046342 -
Cca02g01480 580 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 59 517 - -
Cca02g01480 580 SUPERFAMILY E set domains 68 150 IPR014756 -
Cca02g01480 580 Gene3D - 186 370 IPR046342 -
Cca02g01480 580 Gene3D - 375 518 IPR046342 -
Cca02g01480 580 SMART cbs_1 215 264 IPR000644 -
Cca02g01480 580 SMART cbs_1 396 444 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01480 Cca-Chr2 33422499 33431692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01480 72 158 Protein tyrosine phosphatase (PTP) family AT3G01510 37.778 4.06e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01480 - - ccaj:109789336 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02938 03 50797557 50805706 Cca02g01480 02 33422499 33431692 PCT