Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01474 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCCACAGAGAATACCAGAGAAGATGCAGCAGTTAAACAGCAATCTGAGATACTTGGTCAGTTCCATAGTCCACATTCTCATACCTCAACTACAACAACAACAAATAATAGCAATGGTAATTCCAACACAAATTCACAACCACCTGCACCTGTTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCTCTATCACCAACCACACTAATGGCCACAAACAGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAGTTGCACCGACGGGGCCACAACTTGCCATGGAAGCTCAAGCAGAGAACAAGCACAGAAGTTCGAAAGCGCGTTTATGTGTGTCCAGAACCTTCGTGTGTCCACCACAACCCAGCAAGAGCACTCGGTGATCTCACTGGCATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATATGCTGTTCAGTCTGACTGGAAAGCCCACTCTAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACACACAGAGCCTTCTGTGACGCACTAACTGAGGAGAACAACAAAGGCAACGAAGGAGTACAATTGCCAAAGATAGGTCCAAACTTGCAATGCCAACCAATCCCAAACCTCGTATCCTCATTACCAATCAACACCACTATTCCCAACAACCTCAGTGGAACCTCAGAGTTCAACCATTCGGATCACAAGCACCCTCTATCACTGCCACACGAACTCATGCCACCAAAACCCTTCAACACCAACAACGTTGCCATGTTCACTAGAACCCTCTCATCAACCTCTTCTCCCTCTCTCCAACTAAGCTCAAACATGTTCGAGGAAAACTTGGCTGCAGGCTCGCCACACATGTCAGCCACTGCGCTGCTGCAAAAAGCTGCGCAAATGGGAGCCACGGTGACAGAAAAAACCTTCGCCGCCACAAACATGGCACCGCCGTCGTTCGGCGTGCTGCAACACCAACCAAATAATGGATCGCATTCACAACCCTTCATGAACCACTACATGCACGCTGGACAACACGATGTTAACGTTTCTCCTCAGTATAACAATAGCTTCGGTGCAAGTGGTAGCGTTGGAATGAACGGTGTGGACATGTTTAATGCTATTTTGGATCAAAGCAAGGCCTTGTCGAAGATCATAGAGCAGAACAATAGAAGCAATGGTGGAGGAGGACAAAATGGTGGGTCGAGTAGTGGTGTTAACGTTGGTGGAAGTAAAGGGAATGGGGATGTGATGACTCTGGACTTTTTGGGAATAGGTGGCGGAggtggtggtggtggtggtggtggtggtggtggtggcggtggtggtggaggtgCACATGGAAATTTCTATGGTGGTGGCCAACAAGGGGAAAGTGGTAGTGTACCGGATCATGAGGTTTGGAGAAATTGGTCTAGTAAGAACGCAGGGTTCGAATCATTTTCAGCAACGAGTAGCATTTGA 1578 0.448 MSNITSCDSGSFSTENTREDAAVKQQSEILGQFHSPHSHTSTTTTTNNSNGNSNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNKGNEGVQLPKIGPNLQCQPIPNLVSSLPINTTIPNNLSGTSEFNHSDHKHPLSLPHELMPPKPFNTNNVAMFTRTLSSTSSPSLQLSSNMFEENLAAGSPHMSATALLQKAAQMGATVTEKTFAATNMAPPSFGVLQHQPNNGSHSQPFMNHYMHAGQHDVNVSPQYNNSFGASGSVGMNGVDMFNAILDQSKALSKIIEQNNRSNGGGGQNGGSSSGVNVGGSKGNGDVMTLDFLGIGGGGGGGGGGGGGGGGGGGGAHGNFYGGGQQGESGSVPDHEVWRNWSSKNAGFESFSATSSI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01474 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Cca02g01474 525 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g01474 525 Gene3D Classic Zinc Finger 148 226 - -
Cca02g01474 525 Gene3D Classic Zinc Finger 72 139 - -
Cca02g01474 525 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 8 465 - -
Cca02g01474 525 MobiDBLite consensus disorder prediction 28 62 - -
Cca02g01474 525 SUPERFAMILY beta-beta-alpha zinc fingers 92 189 IPR036236 -
Cca02g01474 525 MobiDBLite consensus disorder prediction 1 77 - -
Cca02g01474 525 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Cca02g01474 525 MobiDBLite consensus disorder prediction 485 504 - -
Cca02g01474 525 SMART c2h2final6 93 115 IPR013087 -
Cca02g01474 525 SMART c2h2final6 169 189 IPR013087 -
Cca02g01474 525 SMART c2h2final6 134 164 IPR013087 -
Cca02g01474 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 465 - -
Cca02g01474 525 MobiDBLite consensus disorder prediction 426 448 - -
Cca02g01474 525 MobiDBLite consensus disorder prediction 426 449 - -
Cca02g01474 525 Pfam Zinc-finger double-stranded RNA-binding 93 115 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01474 Cca-Chr2 33346677 33350826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01474 41 341 IDZ Gene Family AT3G50700 55.522 1.25e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g01474 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01474 - - gmx:100785295 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01474 02 33346677 33350826 Cca02g01474 02 33346677 33350826 ECH
Cca03g02154 03 42103676 42107965 Cca02g01474 02 33346677 33350826 PCT
Cca03g02934 03 50710100 50714217 Cca02g01474 02 33346677 33350826 PCT