Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01472 ATGGATCAGGCGCGATCGGCGAACGGCGAGGAGAATGCGGGAATTCCCGATGACCTGCGGTGCAAGAGGTCCGACGGGAAGCAGTGGCGGTGCACGGCGATGTCGATGCCGGACAAGACGGTGTGCGAGAAGCACTACATCCAGGCGAAGAAGCGCGCGGCGAATTCCGCAATGAGGGCGAATCTCAAGAAGGCGAAGAGGAAGTCGCAGTCGATGTCTGATAACGTTTATTTGGAGAGTAAGAGCGACGATTTCGACGTTCCTCTTTCCTCCATAGGTCATTCTCACAAGAAGCTCTCGAAGAACCAGTTTCGTTACACGCCCGGGCGGAGAAACTCCTCTGTGAGACGCGCTCACAGCAACAACGATGATGACgtggacgtggatgtggatgtggatgaggatgttgatgtggatgcggatgtgCATCTGTATGAAGAAGACAATTGGATCTCCTATGATTCCCCGCCGGATTCTTCTCGGAAGAGGTCGCGGAGGAGCTTGGATGCTAATGCCACCACTGAATATTCCGATGGAACCTCGGGCTCTTCTGACGACACCGGCGGCCAGACTTGTCATCAGTGCCGGAGGAATGACCGGGACCGAGTTACTTGGTGCCTACGGTGTGATAGGAGGGGATACTGTGATGGCTGTTTATCAACATGGTACTCGGACTTTTCAGTGGATGAAATTAAGAGGATATGTCCTGCTTGCCGGGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCGATAAAGGTTCGGATACGAGAGATACCTGTTCTCGATAAGTTGCAGTATCTCCATGTGCTGCTGTCGTCGGTGCTTCCAGTAGTAAAGCAGATCCACCATGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGATAAAATTGAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGTCGCTGTCCAAGTTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGACCGCAATAAAGAACCCCAAACAGAGCAAGCAAAAACTTCTGATCGAAACTTATTAAGTAAGTTTCCTCATTGGAGATCCAATGACAACGGAAGTATTCCATGTCCCCCTAAGGAGTATGGTGGATGTGGTTATTCATCATTAAATTTAAGCCGAATTTTCAAGATGAACTGGGTTGCAAAGTTCGTGAAAAATGTAGAGGAAATGGTTAGCGGCTGCAGAATTAGTAATGCTGATGGTCCACCAGAAACTGGGCTGAATGCTCTCAGTCTTTGCCAGTATTCTCATAGAGAATCTAGTGATGATAATTATCTTTATTGTCCAGCATCTGACGATATCAAAACTGATGGGATTGGAAATTTTAGAAAGCATTGGAAAACTGGGGAGCCCATTATTGTGAAGCAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGAGGGATTCTAGAGACAACAGATGAGAAAGCGAAAGATGAAAACAGAATGGTTAAGGCCATAGACTGCTTAGATGGGTCTGAGATTGATATTGAGCTCTCTCGATTCATGAAACGATACTTTGAAGGGCATATTCATGAAGATTTGTGGCCACAGTTATTTAAATTGAAGGATTGGCCTTCACCTATTGCATCTGAAGAATTTCTATTGTACCAAAGAACTGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCATTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGACTCAGTGACAAATCTCCACTTTAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGCTGAAGGAGTGGCAGAGAACTAAAATTGAAATGACGCAAAAAGCTCAAGCTTATAAGGAAACCGAGGTGAAAGAATCATATGGGGATACTAAAATATCTTCAAGGGGGAGTTCACCTGATTCATCACTTGGTACAAAAAGTAGTGTACTGGATATGGATTCAAACCAGAATAAGTCCATTATGGATCAAGGGTTTGAAATTCATTCTAGTGGTGAAGGTCATATGGTCAATTGTAAACTTCCGTTCACACAAAATGGAGATGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCTGGATGTTCCAACATTGACTAAATATTTGAGAATACATTGGAAGGAATTTGGGAAGTCAGATGATGTAGGAAATGAATTTGTTGCATTGCCCCTTTATGATGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGCCTTGGCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCAATGTTCAGTTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGTGATGCTGTAAGATTGGCAGAGGAAATCCGTTGTCTACCTAATGAGCATGAAGCAAAGCCTCAAGTATTGGAGGTCGGGAAGATATCTCTTTATGCTGCTAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGCAGAGATCGGATATGGAGACCCTAACCTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2787 0.4288 MDQARSANGEENAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSMSDNVYLESKSDDFDVPLSSIGHSHKKLSKNQFRYTPGRRNSSVRRAHSNNDDDVDVDVDVDEDVDVDADVHLYEEDNWISYDSPPDSSRKRSRRSLDANATTEYSDGTSGSSDDTGGQTCHQCRRNDRDRVTWCLRCDRRGYCDGCLSTWYSDFSVDEIKRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHEQCFEVELEKKLRGAEIDLPRIKLNTDEQMCCNFCRIPITDYHRRCPSCSYDLCLNCCRDLREATADRNKEPQTEQAKTSDRNLLSKFPHWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKFVKNVEEMVSGCRISNADGPPETGLNALSLCQYSHRESSDDNYLYCPASDDIKTDGIGNFRKHWKTGEPIIVKQVFDGSSISSWDPMVIWRGILETTDEKAKDENRMVKAIDCLDGSEIDIELSRFMKRYFEGHIHEDLWPQLFKLKDWPSPIASEEFLLYQRTEFISKLPLLQYIHSKWGILNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTNEVKLKEWQRTKIEMTQKAQAYKETEVKESYGDTKISSRGSSPDSSLGTKSSVLDMDSNQNKSIMDQGFEIHSSGEGHMVNCKLPFTQNGDVSEKTHPGVLWDVFRRLDVPTLTKYLRIHWKEFGKSDDVGNEFVALPLYDGAIFLDKHHKRKLKEEFALAFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLAEEIRCLPNEHEAKPQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01472 928 MobiDBLite consensus disorder prediction 150 194 - -
Cca02g01472 928 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 185 252 IPR018866 -
Cca02g01472 928 MobiDBLite consensus disorder prediction 682 700 - -
Cca02g01472 928 ProSiteProfiles JmjC domain profile. 591 858 IPR003347 -
Cca02g01472 928 Coils Coil 653 673 - -
Cca02g01472 928 Pfam WRC 16 56 IPR014977 -
Cca02g01472 928 Gene3D Cupin 453 867 - -
Cca02g01472 928 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Cca02g01472 928 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 917 IPR045109 GO:0032454|GO:0033169
Cca02g01472 928 SUPERFAMILY Clavaminate synthase-like 474 860 - -
Cca02g01472 928 MobiDBLite consensus disorder prediction 89 131 - -
Cca02g01472 928 Coils Coil 55 75 - -
Cca02g01472 928 MobiDBLite consensus disorder prediction 680 700 - -
Cca02g01472 928 MobiDBLite consensus disorder prediction 170 191 - -
Cca02g01472 928 MobiDBLite consensus disorder prediction 1 21 - -
Cca02g01472 928 SMART cupin_9 572 858 IPR003347 -
Cca02g01472 928 PANTHER JMJC DOMAIN PROTEIN JMJ24 9 917 - -
Cca02g01472 928 ProSiteProfiles Zinc finger RING-type profile. 192 239 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01472 Cca-Chr2 33336381 33343049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01472 16 56 GRF Transcription Factor Family AT3G13960 46.341 2.60e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01472 K15601 - gmx:100792166 1644.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01472 02 33336381 33343049 Cca02g01472 02 33336381 33343049 ECH