Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01471 ATGGCGGAAACGCGCGAATCCGCGTCGAAAGAAACCGTTCGCAaagaagaagaagaagaagCTGAGGACCAAAGCTTCGAAGAGCTCGGTCTGGACGCTCGTCTCCTTCGCGCCTTACTCAAGAAAGGGATCGAGAAACCCACTCCAATTCAGCGCGTCGCGATTCCACTCATTTTGGAAGGCAAGGACGTGAAGCTCGCGCCAAATGCTTTCGTTCTTGTTCCTTCTCGTGAACTGTGTCAACAGGTATATAAGGAAGTGCTGTCGCTCATTGAGTTATGCAGAGTTCAGCTGAAAGTTGTGCAGTTGAATGGCAACATGCTTGTTAATGACTTGCGGGCAGCATTGGCTGGACCCCCTGATGTTTTGATCTCCACTCCTGCTTGCATTGCGAAGTGTTTGTCCAGTGACGTACTGAAGGCGGCATCCATTAACCAATCGCTTGAAACTCTAGTTCTAGATGAGGCAGATCTTCTATTATCATACGGCTATGAAAGTGATATAAAAGCTTTTACACCACACGTTCCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGCGCGGATGTTGACAAATTAAAGAAGTTGATTCTACACAACCCCTTTATTTTGACTTTGCCTGAAGTTGGAAATCATAAGGATGAAGTCATTCCTAAAAATGTTCAGCAATTTTGGATCTCATGCCCTGCCAGTGATAAGTTGCTTTACACCCTTGCTCTGCTGAAGTTGGAGTTGGTCCAAAAGAAAGTTCTGATATTCACTAATACCATTGACATGAGTTTCAGACTGAAACTATTCTTGGAAAAGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCTGGCCTATTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGAGACCAAAGAAAGTAATGTTGGATCACGGAAGTCTAGAAAACATGCTAAAATAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGGATTGACTTTAAAAATGTATACACGGTTATAAACCTTGAAATGCCTCAGAGTCTTGCGGGATATGTACATCGAATTGGCCGTACAGGAAGAGCATACAGTTCTGGTGCTTCTGTCTCTCTGGTTTCTCCGGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTATTGGAGATGATGAAAGCAAAGGAACAAATTCTATCGTGGAGTTTCCCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGGATGTCGGGAAGAGTGTAACTAAAGTTGCTGTCCGAGAGTCACGAGCGCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCACTTTGAAACTAATCCAAGAGACCTAGATCTACTGAAGCATGACAAAGTATTGAGCAAGAATGCTCCTCCACCGCACCTACGTAATGTGCCTGACTACCTATTAGACAAAACAACGAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAATCGCCGCAGAGGATCCAAGAGAAAATTAAGAAAAGATGGAGATCCTCTAAAGGCTATCGCTGCTGGATCAAGAAGACGGCACAAAGATAGGAAGACTGGTGCAAGCAATAGCAACAATAGCGCAACTGTCTCCATTCCAACACTCAccgacgccgccgccgccgctgcAACTTCAATCCCCGAACAGTCACGCAGCAGCAACCGCTCTCGCGCGTTCAACTCACTCGCAATTCACTTCCTCTCTCGTCGCCACAGTGAATAA 1815 0.4275 MAETRESASKETVRKEEEEEAEDQSFEELGLDARLLRALLKKGIEKPTPIQRVAIPLILEGKDVKLAPNAFVLVPSRELCQQVYKEVLSLIELCRVQLKVVQLNGNMLVNDLRAALAGPPDVLISTPACIAKCLSSDVLKAASINQSLETLVLDEADLLLSYGYESDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPASDKLLYTLALLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEETKESNVGSRKSRKHAKIKLDSEFGVVRGIDFKNVYTVINLEMPQSLAGYVHRIGRTGRAYSSGASVSLVSPDEMDTLEEIRSFIGDDESKGTNSIVEFPLTKNAVESLRYRAEDVGKSVTKVAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPPHLRNVPDYLLDKTTKEAREMVKLARDAMGNNNRRRGSKRKLRKDGDPLKAIAAGSRRRHKDRKTGASNSNNSATVSIPTLTDAAAAAATSIPEQSRSSNRSRAFNSLAIHFLSRRHSE 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01471 604 Pfam DEAD/DEAH box helicase 67 195 IPR011545 GO:0003676|GO:0005524
Cca02g01471 604 Gene3D - 1 65 IPR027417 -
Cca02g01471 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 389 IPR027417 -
Cca02g01471 604 Coils Coil 446 466 - -
Cca02g01471 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 241 423 IPR001650 -
Cca02g01471 604 SMART helicmild6 263 377 IPR001650 -
Cca02g01471 604 Pfam Helicase conserved C-terminal domain 234 377 IPR001650 -
Cca02g01471 604 Gene3D - 210 416 IPR027417 -
Cca02g01471 604 PANTHER RNA HELICASE 11 516 - -
Cca02g01471 604 MobiDBLite consensus disorder prediction 1 19 - -
Cca02g01471 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Cca02g01471 604 CDD SF2_C_DEAD 223 386 - -
Cca02g01471 604 MobiDBLite consensus disorder prediction 1 26 - -
Cca02g01471 604 Gene3D - 66 208 IPR027417 -
Cca02g01471 604 MobiDBLite consensus disorder prediction 510 562 - -
Cca02g01471 604 SMART ultradead3 43 226 IPR014001 -
Cca02g01471 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 206 IPR014001 -
Cca02g01471 604 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 11 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01471 Cca-Chr2 33328518 33336329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01471 25 400 Eukaryotic Initiation Factors Gene Family AT3G19760 24.627 5.98e-29 117