Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca02g01456 | ATGGTAGTTTCTGGTGGTGCACGTGTCACCACAAGACCCACAAAGTTGGAGTGTTCATATTTTCTACCAACTGAAGAATCCAATCCCATCTTCCCATTCGCTACTTCTCATCTAATTCTAAGGACAAAAATGAGTGGTCGATCAAGTCGCACAATTTATGTTGGCAACCTTCCTGGTGATATTCGCTTGAGAGAAGTAGAGGATCTGTTCTACAAGTATGGTCCTATTGTTGACATTGATTTGAAGGTCCCTCCAAGACCACCAGGCTATGCTTTTGTAGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCAATATCGAGATGGTTACAATTTTGATGGTTTTCGATTACGTGTTGAACTTGCACATGGTGGACGGGGACATTCATCATCTGTAGACCGTTACAGTAGCTATAGTGGTAGCAGTGGTAGCCGTGGAGTTTCCAGGCGTTCTGACTACCGTGTTCTGGTCACTGGATTACCTCCATCTGCTTCATGGCAAGACCTGAAAGATCACATGCGCAAAGCTGGTGATGTGTGTTTTTCACAAGTCTTCCGTGAGCGTGGTGGCATGACTGGGATAGTTGATTATACCAATTATGATGATATGAAATATGCTATCAGGAAACTTGATGACTCAGAATTCCGCAATGCCTTTTCTCGGGCGTACATACGAGTGAGGGAATATGATCGAGGTTATTCTAGAAGTCCCAGTCATGATTCAAGGAGGAGCTATTCTAGAagcctcagccgcagtccatatatctcacgtagccgcagccgcagccgcagccaaagtcatagctatagcGATAGGAGCAGAAGTTTCTCTCCAAAAGCAAAACACTCTCGGCGCTCAATATCTCTTTCAAGATGTGGCCTTATGCGGCGACCTGGGAACTGCATGTTAGGATCTTGA | 921 | 0.4093 | MVVSGGARVTTRPTKLECSYFLPTEESNPIFPFATSHLILRTKMSGRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKVPPRPPGYAFVEFEDARDAEDAIQYRDGYNFDGFRLRVELAHGGRGHSSSVDRYSSYSGSSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRGYSRSPSHDSRRSYSRSLSRSPYISRSRSRSRSQSHSYSDRSRSFSPKAKHSRRSISLSRCGLMRRPGNCMLGS | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca02g01456 | 306 | MobiDBLite | consensus disorder prediction | 126 | 148 | - | - | |
| Cca02g01456 | 306 | Gene3D | - | 40 | 153 | IPR012677 | - | |
| Cca02g01456 | 306 | SMART | rrm1_1 | 51 | 121 | IPR000504 | GO:0003723 | |
| Cca02g01456 | 306 | SMART | rrm1_1 | 155 | 224 | IPR000504 | GO:0003723 | |
| Cca02g01456 | 306 | MobiDBLite | consensus disorder prediction | 233 | 290 | - | - | |
| Cca02g01456 | 306 | Gene3D | - | 154 | 231 | IPR012677 | - | |
| Cca02g01456 | 306 | PANTHER | PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN | 46 | 292 | - | - | |
| Cca02g01456 | 306 | CDD | RRM1_SF2_plant_like | 51 | 122 | - | - | |
| Cca02g01456 | 306 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 46 | 292 | - | - | |
| Cca02g01456 | 306 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 50 | 125 | IPR000504 | GO:0003723 | |
| Cca02g01456 | 306 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 154 | 232 | IPR000504 | GO:0003723 | |
| Cca02g01456 | 306 | MobiDBLite | consensus disorder prediction | 131 | 148 | - | - | |
| Cca02g01456 | 306 | MobiDBLite | consensus disorder prediction | 248 | 274 | - | - | |
| Cca02g01456 | 306 | SUPERFAMILY | RNA-binding domain, RBD | 48 | 220 | IPR035979 | GO:0003676 | |
| Cca02g01456 | 306 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 52 | 119 | IPR000504 | GO:0003723 | |
| Cca02g01456 | 306 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 156 | 218 | IPR000504 | GO:0003723 | |
| Cca02g01456 | 306 | CDD | RRM2_SF2_plant_like | 154 | 229 | - | - | |
| Cca02g01456 | 306 | MobiDBLite | consensus disorder prediction | 233 | 247 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca02g01456 | Cca-Chr2 | 33134555 | 33140875 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca02g01456 | 42 | 212 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 25.424 | 1.27e-06 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca02g01456 | K12890 | - | gmx:100794282 | 388.267 |