Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01454 ATGAGTCGAGGAGGTGCAGCTAGTGCCAAGGGAAAGAAGAAAGGGGCGACATTCACCATCGATTGCGCGAAGCCTGTGGAGGACAAGATCATGGACATTGCGTCTCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTCGGTGGCAAGGCCGGCGCTCTCGGCGACACCGTCACCGTCGCACGTGAGAAGACCAAAATCATCGTTACTTCCGATAGCAACTTCTCCAAACGGTACCTCAAGTACTTGACTAAGAAGTACTTGAAGAAGCACAATGTTCGGGATTGGCTCAGAGTGATTGCTTCTAACAAAGATAGAAGTGTTTATGAACTGAGGTTTGGGAAGTCTGTTCCAAAAACAGTGGGTACTGAAGATAAGCCTTTCTTTCCCATTTTGATTGTATTACGTGATTTTAAGGTTTAA 420 0.4619 MSRGGAASAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVAREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRFGKSVPKTVGTEDKPFFPILIVLRDFKV 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01454 139 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 113 - -
Cca02g01454 139 Pfam Ribosomal L22e protein family 14 112 IPR002671 GO:0003735|GO:0005840|GO:0006412
Cca02g01454 139 PANTHER 60S RIBOSOMAL PROTEIN L22 1 113 IPR002671 GO:0003735|GO:0005840|GO:0006412
Cca02g01454 139 Gene3D - 5 125 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01454 Cca-Chr2 33122713 33124590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01454 1 112 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 83.929 6.95e-57 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01454 K02891 - gmx:100499952 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01454 02 33122713 33124590 Cca02g01454 02 33122713 33124590 ECH
Cca03g02917 03 50563275 50565362 Cca02g01454 02 33122713 33124590 PCT