Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01451 ATGGGTATCGATCTCAAGGCCGGAGGTAAGAGCAAGAAGACCAAAAGAACCGCACCAAAGTCCAATGATATCTATCTCAAGCTCTTGGTTAAGCTTTATCGCTTCCTTGTTCGGAGAACTGGCAGCAATTTCAATGCTGTAGTACTCAAGCGTTTATTCATGAGCAAGGTTAATAAGCCCCCAATGTCTTTATCAAGATTGATCAAGTATACAAAGGGAAAGGAAGATAAGATTGCCGTGGTGGTGGGGGCTGTAACCGATGATATTCGTGTTTATGAAGTTCCATCCTTGAAAGTTACAGCACTCAGGTTTACAGGGACTGCTCGTGCAAGAATTGAGAAGGCCGGTGGTGAATGCCTGACGTTTGAACAGTTGGCTCTAAGGGCACCTCTGGGACAGAACACGGTACTTCTTAGAGGCCCTAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCCTGCTCCCGGTGTGCCTCACAGCCACACCAAGCCTTATGTTCGAGCAAAGGGAAGGAAGTTTGAGAGGGCTAGAGGAAGGAGGAACAGCCGAGGATTTAGGGTTTGA 564 0.4734 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKPPMSLSRLIKYTKGKEDKIAVVVGAVTDDIRVYEVPSLKVTALRFTGTARARIEKAGGECLTFEQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01451 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
Cca02g01451 187 Gene3D - 1 187 - -
Cca02g01451 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Cca02g01451 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
Cca02g01451 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01451 Cca-Chr2 33088634 33091106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01451 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 76.344 3.70e-101 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01451 K02883 - gmx:100791657 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02911 03 50518789 50521042 Cca02g01451 02 33088634 33091106 PCT