Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01449 ATGGCTGAGGAAGATGTAGGGAAGAAGAGGAGACTCATCACCATTGGCGTCTCTAGCATCTTCCTAGTGGCTATGGTCATTGCCGTCACCGTTGGTGTGAACCTGAATCTGACAGGTTCCGAGGAAGACGAAGAAAAATCCAAGCCCTACGTTATTTCCACTAGGAAAGCCGTGAAAACCATTTGCAAACCCACAGATTACAGAAAAGAATGCGAGAAAAGCCTGAGAGCAGAGGCTGGGAACACGACGGACGCAAGAGAACTCATAAAAATAGCCTTCAATGTTACCATAAAGAAAATAGGTGACAGTATCAAGAAAACAGATCTGATGAACGAGGTAGAGAAGGACCCTAGGGCAAAGATGGCGCTTGACACGTGCAAGCAGCTCATGGATCTTTCCATAGGGGAATTCAAGAGATCGCTGGAGAGAATGCGGTCTTTTGACCTCGACAACCTCGACAACATCCTCAACACTTTGAGGGTTTGGCTCAGCGGTGCTGTCACGTACCAAGAGACATGTTTGGATGGGTTCGACCACACCACAGGGGAAGGAGGGAGGAAGATGAAGCAACTGTTGAAGGTCACCATGCACCTCAGTAGCAACGCCCTTGCCATCATCTCAGAGCTTGCAGACACTGTCGCGGATTTGAATGCGACCATGAATGGACGTCGTCGCCTTCTCGATGATTCAAGGGGTGTTCGTGGTTTTGTCCATCGTGAGGATGGGGTTATTCCCTATTGGGTTAATAATGACGGTGTTCATAGATTCCTTCATGCTCATTCGAGTCCAAAGACTATAAAGCCTGATGTGGTTGTGGCCAAAGATGGGAGTGGAAAGTACAGGAGCATCAACAAGGCCTTGCGGCATGTTCCTAAGAAGAACCAAAAGCCCTTCGTCATTTACATCAAGGAGGGTGTTTACCATGAGTATGTTGAAGTCAAGAAGAACATGACCCATGTCGTGTTTGTGGGTGATGGTGGCACCAAGACACGAATCACCGGCAACAGAAATTTCATAGATGGGATTAATACTTACAGAACCGCCACTGTTGCCATTCAAGGAGATTACTTTGCTGCCATCAACTTAGGGTTTGAGAACTCTGCTGGCCCCCACAAACATCAAGCAGTAGCCATAAGGGTCCAAGCAGACAAATCCATTTTCTATAAATGCACAATGGATGGGTATCAAGACACACTATACGCCCATGCCATGCGTCAGTTCTACAGAGATTGCACCATTTCAGGCACCATAGACTTCGTCTTCGGTGATGCAGTGGCTGTTTTCCAAAACTGCAATTTCGTGGTGAGAAAGCCGATGGAAAACCAACAATGTATTGTGACAGCACAAGGTAGAAAGGAGAGGCACCAACCATCAGGAACAGTGATCCAAGGAGGCTCCATTGTGTCCGAACACAAAGTGAAGTTTCATAACAAGGCTTACCTAGCTCGTCCATGGAAGAATTACTCAAGAACCGTCTTCATAGACACCTACATTGGCGATTTGATTCAACCTGATGGGTATATGCCATGGCAAGGACCAAATGGTCATTCGGGCATGGACACTTGTTTCTATGCCGAGTTCAATAACACTGGTCCTGGTTCAAACAAATCCAAGCGTGTGAAATGGCGTGGGATCAAGAACCTCGATTCAGAAGCCGTGTCCCGTTACTTGCCATACAAGTTTTTTCGTGGAGATGATTGGATTAAAGTTACTAGGGTTCCTTACGACTCAGCTGCAACCTTACCCAATTACTAA 1755 0.4672 MAEEDVGKKRRLITIGVSSIFLVAMVIAVTVGVNLNLTGSEEDEEKSKPYVISTRKAVKTICKPTDYRKECEKSLRAEAGNTTDARELIKIAFNVTIKKIGDSIKKTDLMNEVEKDPRAKMALDTCKQLMDLSIGEFKRSLERMRSFDLDNLDNILNTLRVWLSGAVTYQETCLDGFDHTTGEGGRKMKQLLKVTMHLSSNALAIISELADTVADLNATMNGRRRLLDDSRGVRGFVHREDGVIPYWVNNDGVHRFLHAHSSPKTIKPDVVVAKDGSGKYRSINKALRHVPKKNQKPFVIYIKEGVYHEYVEVKKNMTHVVFVGDGGTKTRITGNRNFIDGINTYRTATVAIQGDYFAAINLGFENSAGPHKHQAVAIRVQADKSIFYKCTMDGYQDTLYAHAMRQFYRDCTISGTIDFVFGDAVAVFQNCNFVVRKPMENQQCIVTAQGRKERHQPSGTVIQGGSIVSEHKVKFHNKAYLARPWKNYSRTVFIDTYIGDLIQPDGYMPWQGPNGHSGMDTCFYAEFNNTGPGSNKSKRVKWRGIKNLDSEAVSRYLPYKFFRGDDWIKVTRVPYDSAATLPNY 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01449 584 Gene3D - 263 579 IPR012334 -
Cca02g01449 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 209 IPR035513 -
Cca02g01449 584 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Cca02g01449 584 SUPERFAMILY Pectin lyase-like 265 575 IPR011050 -
Cca02g01449 584 SMART PMEI_2 53 205 IPR006501 GO:0004857
Cca02g01449 584 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Cca02g01449 584 PANTHER PECTINESTERASE 10 580 - -
Cca02g01449 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 209 IPR006501 GO:0004857
Cca02g01449 584 CDD PMEI-like_3 60 210 - -
Cca02g01449 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 210 IPR035513 -
Cca02g01449 584 PANTHER PECTINESTERASE 10 580 - -
Cca02g01449 584 Pfam Pectinesterase 269 565 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01449 Cca-Chr2 33071639 33074434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01449 3 575 Carbohydrate Esterase AT3G05610 51.042 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01449 K01051 - gmx:100794799 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01449 02 33071639 33074434 Cca02g01449 02 33071639 33074434 ECH
Cca03g02906 03 50394109 50396855 Cca02g01449 02 33071639 33074434 PCT