Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01448 ATGGCCACAAACATGAAGGCATGGACTACTTTGTACGCCcttcttttcctcttcttttcttcctctCATGTCTCCTCGGAAAGCACGTGCGACGCCACACCCTACCCAGAATTCTGCAAAACTATTCTCCCCCATCAATATGTATCCACACACGACCGATGCCGTTTCTTCCTTCAACAATCCCTATCAACAACAAAAACCATTTCAGAACTGGTCTCTTCTTATCTCACAAACCAACACACCATTCCTTATTCAACAGTACACGCCCTTGAAGATTGTCTCAATCATGCAGAACTCAACACTGATTTCTTGTCCAATGTCCTCCAAACCATTGAAAACACCGTGACCATGACAAGCTATCAGGTCTATGACTTGCAAACCTTGCTTAGTGCAACTTTAACCAACCAACAAACATGCTTGGATGGTTTTAACGAGGTAATAACTCCCTATCCTCTAGTTACCAGTGCCTTGACAAGTCCTCTTTCTGATGGGACCAAACTATATAGCATATCTTTGGCCCTTTTCACCCTTTGTTGGGTTAGTGATGCCACGGGAAGTTCAAATTCAACCACAGTTGAGACTATTCTAAATAGAAAGTTATTGCAAACAAGCGTTGACGATGTTCTGGTGACACAAAAAGTGGTGGTGAACCCTGATGGTTCCGGGGATTTCACTAACATCAATGATGCAGTGAGTGCTGCACCTAACAATACCGGCACCAACAACGGGTACCATGTAATTTATGTTGTCGCTGGGGTTTACAACGAGTACGTGTCTGTTCCTAAGAGCAAGAAGAACCTCATGATCGTTGGAGATGGCATCAACCGCACTGTGATCACTGGCAATCGCAGCGTGGTTGATGGCTGGACCACTTTCCAATCTGCCACTTTTGCTGTAGATGGAAAAGGGTTTGTTGCAGTGAACATAACATTTCGTAACACTGCGGGGCCGAGCCAGCATCAAGCAGTGGCTGTGAGAAACGGGGCAGACATGTCCGCGTTCTACAATTGTAGTTTTGAAGGTTACCAAGACACACTCTACGTATATTCCCTAAGGCAATTCTACAAAAGCTGTGACATATACGGCACAGTGGATTTCATATTTGGCAATGCAGCAGCACTACTCCAGGATTGTAACTTGTATCCAAGACTTCCTATGCAAAACCAATTCAATGCAATCACAGCACAAGGCCGAACGGATCCAAACCAAAACACAGGCATCTCAATACACAACTGTAACATAATAGCATCCAGTGAATTGGGTGATGCTAGCAGCAATGATAATGGGATAATGACGTATTTGGGTAGGCCTTGGAAGGAGTATTCGAGGAGTGTTTACATGCAATGTTTCATGGATGGCCTAATTGATGCAAAGGGTTGGAAGGAATGGTCGGGGGATTTTGCTTTGAGCACACTGTATTATGCAGAGTTTGCTAACTGGGGATCTGGTTCAAACACTAGCGATAGAGTCACATGGGAAGGGTACCATATCATTGATGAAAATGAAGCAGATGATTTCACAGTGCACAAATTTATTCAAGGTGATAAATGGCTGCCAAAGACAGGAGTGCCTTTCAAAGCTGGGTTACACTGA 1593 0.4357 MATNMKAWTTLYALLFLFFSSSHVSSESTCDATPYPEFCKTILPHQYVSTHDRCRFFLQQSLSTTKTISELVSSYLTNQHTIPYSTVHALEDCLNHAELNTDFLSNVLQTIENTVTMTSYQVYDLQTLLSATLTNQQTCLDGFNEVITPYPLVTSALTSPLSDGTKLYSISLALFTLCWVSDATGSSNSTTVETILNRKLLQTSVDDVLVTQKVVVNPDGSGDFTNINDAVSAAPNNTGTNNGYHVIYVVAGVYNEYVSVPKSKKNLMIVGDGINRTVITGNRSVVDGWTTFQSATFAVDGKGFVAVNITFRNTAGPSQHQAVAVRNGADMSAFYNCSFEGYQDTLYVYSLRQFYKSCDIYGTVDFIFGNAAALLQDCNLYPRLPMQNQFNAITAQGRTDPNQNTGISIHNCNIIASSELGDASSNDNGIMTYLGRPWKEYSRSVYMQCFMDGLIDAKGWKEWSGDFALSTLYYAEFANWGSGSNTSDRVTWEGYHIIDENEADDFTVHKFIQGDKWLPKTGVPFKAGLH 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01448 530 Pfam Plant invertase/pectin methylesterase inhibitor 27 174 IPR006501 GO:0004857
Cca02g01448 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 178 IPR035513 -
Cca02g01448 530 SUPERFAMILY Pectin lyase-like 213 528 IPR011050 -
Cca02g01448 530 PANTHER PECTINESTERASE 13 528 - -
Cca02g01448 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 177 IPR035513 -
Cca02g01448 530 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Cca02g01448 530 SMART PMEI_2 21 174 IPR006501 GO:0004857
Cca02g01448 530 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 175 IPR006501 GO:0004857
Cca02g01448 530 CDD PMEI-like_3 30 176 - -
Cca02g01448 530 Gene3D - 208 529 IPR012334 -
Cca02g01448 530 Pfam Pectinesterase 214 515 IPR000070 GO:0030599|GO:0042545
Cca02g01448 530 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 13 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01448 Cca-Chr2 33068436 33070649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01448 9 529 Carbohydrate Esterase AT4G02330 50.265 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01448 K01051 - gmx:100810329 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02905 03 50388015 50392208 Cca02g01448 02 33068436 33070649 PCT