Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01444 ATGCAGGGTTATTTGAATCATTTTTTAGGAAACCTGGATATTGTGAATTCTCAAGAGGTGTGCAAGTTTTTGGAAGTCTCCAAGCTATCCTTCTTACAGGAGTATGGTCCAAAACTGAAAGAGGGATATGTAATGGTGAAGCATTTGTCAAATGTTTCACAGGATTCAGATGTATCATGCTTCCCATGCAATTGGTTTCATTGTTGGAATAACAACTGGAAAAAGGTATGGGCTGTCTTGAAACCTGGGTTTTTGGCCTTCCTGGATGATCCCTTCAACAACAAACCACTGGATATAATTATTTTTGATATCCTCCCTTCCTCAAATGGAGGTAGCAAAATACATTTAGCTGATATTGTGAAAGAACGCAATCCTTTGCGTTACACATTCAAGGTTACTAGTGGAAATAGGAGCATATTGTTGAGAACTACCAGCAGTGCTAGAGTAAAATCTTGGGTTACTGCAATTAATGAAGCTAGTCTAAGACCTCTTGAGGGTTGGTGTTGTCCTCATCGTTTTGGTTCCTTTGCTCCCATAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTAGACGGACAGGCAGCATTTGAAGCAATTGCTACTTCAATTCAAGATGCAAAGTCGGAGATCTTCATTACAGGTTGGTGGCTGTGCCCAGAGCTATATCTGAGACGGCCTTTTCATAGTTCTTCTACCTCCCGGTTAGATTCGATACTAGAAGAAAAGGCTAAGCAAGGGGTTCAGATCTATGTGCTTCTCTACAAGGAGGTTTCTCTCGCTTTGAAAATCAACAGCTTGTACAGTATGAGAAGACTGCTCAAAATTCATGAGAATGTGAGGGTATTGCGGTATCCGGATCATTTTGCTGCTCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTACATTGGAGGATTAGATTTATGCTTTGGTCGATATGACACACCAGAACATAAAGTGGGTGACTTCCCTTCTGTAACATGGCCTGGAAAGGACTATTACAATCCAAGAGAATCTGAGCCAAATTCATGGGAAGACACAATGAGAGATGAATTGGATCGCAAGAAATATCCCCGTATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATAGCTCGGCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACATGCTATTCCACTACTTATGCCTCATCATCACATGGTCATCCCTCATTACATGGGAAGAAGCAAAGAGATAGACATTGATCAAAAGAAAGATGAAGACAAGAGGAATGGAATTGAGAGGCAGGATTCATTTTCCTCAGAGTCTCCGATGCAAGATATACCACTACTTTTGCCTCAAGAAGCTGATGGACTAGGTACTTCAAATGGAGATCATACAAATTTAAGTGAAAATTCTCCTTTGTTGTCACAAAAGCCGGAGCATGTAACTTTAGTTTCAGACACCCAGATGAAAGGGTTTCAAGATGAAGTTGTTCCTTTAAACTTGGGGCCACAATCTGTTGTCGATGCTCTTGATGATTGGTGGGAAACACCAGAAGGCACCAATGATGACACAACTTTGGAATATGGACAAGTCGGTCAACGTAGTACATGTCATTGTCAGGTAATCAGAAGTGTAAGCCAGTGGTCTGCTGGAACAAGTCAGCCTGAAGAAAGCATTCAAACTGCATATTGTTCTCTTATTGAAAAAGCAAAGCATTTTATCTACATAGAGAACCAATTTTTCATATCAGGTCTAGCAGGGGATGACATAATACAGAACCGTATTTTGGAAGCACTTTACAGGCGTATTTTGCTAGCCCACAAAGAACAGAAAGATTTTAGAGTCATAGTTGTGATGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCTACTGTGAGAGCCTTAACACATTGGCAGTATAGAACGATTTCTAGAGAAAAGCACTCCATATTACACAATCTTGAAGCTATACTTGGTCCTAAGGCACATGATTATATTTCTTTTTATGGCCTAAGATCTCATGGTAGACTTTATGAAAATGGCCCTGTGGCCACAAGTCAGGTATATGTTCACAGTAAGTTGATGATAATTGATGACCGTGTAGCTTTTATTGGATCATCTAATATAAATGACCGTAGTTTGCTTGGACTGAGAGACTCTGAGATCGGAGTGCTTATAGAAGACAAAGAATATGTTGAATCATTGATGAATGGAAAGCCATGGAAGGCTGGGAAATTTTCCTATAGCCTCCGCTGCTCCCTATGGTCTGAGCATCTTGGTCTTCGTACTGGAGAGATCAGTAAAATTAGTGATCCGGTGGCCAATACAACCTACAAGGACTTGTGGTCAGCAACTGCAAAGGAAAATACTAGGATATACCACGAGGTCTTTGCTTGCATTCCCAACGATCAGATACACTCAAGAGCTGCACTTAGGCAAAACATGGCTCAGTGGAAAGAAAAACTTGGACATACCACCATAGATTTGGGAATAGCCCCTGATAAGTTAGTCTATCATGAGAATGGAGAAACCAAAACAATAGACCCGACAGATATGTTGAAGTCTGTGAAGGGACATCTTGTTTCCTTTCCTTTGGAGTTCATGCGTGAGGAAGATCTAAGACCAGCTGTTATTGAGAGCGAGTTTTATGTTGCTCCTCAAGTATATCATTAA 2730 0.4132 MQGYLNHFLGNLDIVNSQEVCKFLEVSKLSFLQEYGPKLKEGYVMVKHLSNVSQDSDVSCFPCNWFHCWNNNWKKVWAVLKPGFLAFLDDPFNNKPLDIIIFDILPSSNGGSKIHLADIVKERNPLRYTFKVTSGNRSILLRTTSSARVKSWVTAINEASLRPLEGWCCPHRFGSFAPIRGLTEDGSQAQWFVDGQAAFEAIATSIQDAKSEIFITGWWLCPELYLRRPFHSSSTSRLDSILEEKAKQGVQIYVLLYKEVSLALKINSLYSMRRLLKIHENVRVLRYPDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHKVGDFPSVTWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHAIPLLMPHHHMVIPHYMGRSKEIDIDQKKDEDKRNGIERQDSFSSESPMQDIPLLLPQEADGLGTSNGDHTNLSENSPLLSQKPEHVTLVSDTQMKGFQDEVVPLNLGPQSVVDALDDWWETPEGTNDDTTLEYGQVGQRSTCHCQVIRSVSQWSAGTSQPEESIQTAYCSLIEKAKHFIYIENQFFISGLAGDDIIQNRILEALYRRILLAHKEQKDFRVIVVMPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILHNLEAILGPKAHDYISFYGLRSHGRLYENGPVATSQVYVHSKLMIIDDRVAFIGSSNINDRSLLGLRDSEIGVLIEDKEYVESLMNGKPWKAGKFSYSLRCSLWSEHLGLRTGEISKISDPVANTTYKDLWSATAKENTRIYHEVFACIPNDQIHSRAALRQNMAQWKEKLGHTTIDLGIAPDKLVYHENGETKTIDPTDMLKSVKGHLVSFPLEFMREEDLRPAVIESEFYVAPQVYH 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01444 909 Gene3D Endonuclease Chain A 528 769 - -
Cca02g01444 909 CDD PLDc_vPLD1_2_yPLD_like_2 565 749 - -
Cca02g01444 909 SUPERFAMILY Phospholipase D/nuclease 148 416 - -
Cca02g01444 909 MobiDBLite consensus disorder prediction 433 486 - -
Cca02g01444 909 SUPERFAMILY Phospholipase D/nuclease 544 755 - -
Cca02g01444 909 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 323 IPR001736 GO:0003824
Cca02g01444 909 Pfam PH domain 40 160 IPR001849 -
Cca02g01444 909 Gene3D - 33 160 IPR011993 -
Cca02g01444 909 Gene3D Endonuclease Chain A 182 421 - -
Cca02g01444 909 ProSiteProfiles PH domain profile. 37 161 IPR001849 -
Cca02g01444 909 PIRSF PLD_euk 1 429 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cca02g01444 909 PIRSF PLD_euk 422 909 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cca02g01444 909 Pfam Phospholipase D Active site motif 296 323 IPR001736 GO:0003824
Cca02g01444 909 PANTHER PHOSPHOLIPASE D 2 906 IPR015679 -
Cca02g01444 909 CDD PH_PLD 15 159 - -
Cca02g01444 909 SMART PH_update 38 163 IPR001849 -
Cca02g01444 909 PANTHER PHOSPHOLIPASE D ZETA 2 2 906 - -
Cca02g01444 909 SUPERFAMILY PH domain-like 68 161 - -
Cca02g01444 909 SMART pld_4 705 732 IPR001736 GO:0003824
Cca02g01444 909 SMART pld_4 296 323 IPR001736 GO:0003824
Cca02g01444 909 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 705 732 IPR001736 GO:0003824
Cca02g01444 909 MobiDBLite consensus disorder prediction 472 486 - -
Cca02g01444 909 MobiDBLite consensus disorder prediction 433 448 - -
Cca02g01444 909 CDD PLDc_vPLD1_2_yPLD_like_1 189 333 - -
Cca02g01444 909 Pfam PLD-like domain 578 752 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01444 Cca-Chr2 33002622 33014828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01444 1 909 Phospholipase D Gene Family (Wang group) AT3G05630 65.577 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01444 K01115 - gmx:100796914 1736.47