Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01442 ATGGGGCATTTTTCATCTGCATTCAATAGGTTGGCAAAGTCATTTGCGATGAAGAAAGGGAGAAATTCTAGTGAATGTAATCGGAGAGAAGCTGCAGAAGCAATGGTAAAGGAAGCCAAAAAAAATAACTTCATACTACATAGCTCAGGCACCATTAATGTTGATGGATCAAACAACTTTGCCTCAGTTTTCTCCAAAAAAGGCAAGAAAGGAGTCAATCAGGATTGTTGCGTAGTGTGGGAAGAATTTGGGTGCCAAGAGGACATGATCTTCTGTGGGATTTTTGATGGACACGGACCATGGGGTCACTTTGTGGCCAAAAGAGTACGGAAGTCAATGCCACCATCCTTGCTATGCAACTGGCAAGAGACACTTTCCCAAACTTCACTTGATCCAGATGTTGATGTTGATATAGAGACAGAGAAAAAGCAACACCGGTTTAATATATGGAAGCATTCCTACTTGGAGACTTGTGCTGCCATTGATCGAGAACTAAAGCAGAATCGCAAGATAGATTCATTTTACAGCGGAACAACTGCATTGTCAATTGTTAGACAGggtgaactcattgtcattgcaaatgttggtgactctcgtgctgtattagctacagcatcagatgatggaagtatggtagcagttcagctaacagtagatttcaagcctaatttacctcaggaggcagcgcgaatactcgagtgccaaggacgagttttctgcttagacgacgagccgggggtgcacagggtgtggttgccggatgaggagtctccaggacttgccatgtcaagggcttttggtgactactgcgtcaaagagtatggtcttatttcagtgcctgagataacacacaggaacataaccagcaaagaccagtttgttgtgctagccactgatgggGTGTGGGATGTAATCTCCAACCAAGAAGCGGTGGATATTGTGTCTTCAACTCCAGACAGAACAGACTCTGCTAAACGTTTGGTAGAGTGTGCAATGCGTGCATGGAAACGCAAGAGGAGGGGCATTGCAATGGATGACATTTCAGCTATTTGTCTCTTCTTTCACTCCTCACCTTCACTTCACCAAGTTGCCACCTTAGAATAG 1104 0.2953 MGHFSSAFNRLAKSFAMKKGRNSSECNRREAAEAMVKEAKKNNFILHSSGTINVDGSNNFASVFSKKGKKGVNQDCCVVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRKSMPPSLLCNWQETLSQTSLDPDVDVDIETEKKQHRFNIWKHSYLETCAAIDRELKQNRKIDSFYSGTTALSIVRQGELIVIANVGDSRAVLATASDDGSMVAVQLTVDFKPNLPQEAARILECQGRVFCLDDEPGVHRVWLPDEESPGLAMSRAFGDYCVKEYGLISVPEITHRNITSKDQFVVLATDGVWDVISNQEAVDIVSSTPDRTDSAKRLVECAMRAWKRKRRGIAMDDISAICLFFHSSPSLHQVATLE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01442 367 SMART PP2C_4 47 352 IPR001932 -
Cca02g01442 367 ProSiteProfiles PPM-type phosphatase domain profile. 60 354 IPR001932 -
Cca02g01442 367 Pfam Protein phosphatase 2C 84 331 IPR001932 -
Cca02g01442 367 SUPERFAMILY PP2C-like 58 356 IPR036457 -
Cca02g01442 367 CDD PP2Cc 59 354 IPR001932 -
Cca02g01442 367 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 363 - -
Cca02g01442 367 Gene3D - 48 356 IPR036457 -
Cca02g01442 367 PANTHER ALPHABET, ISOFORM E-RELATED 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01442 Cca-Chr2 32991514 32993370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01442 1 355 PP2C-type Phosphatase Gene Family AT3G05640 71.148 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01442 - - gmx:100793051 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02898 03 50309755 50332169 Cca02g01442 02 32991514 32993370 PCT
Cca01g00513 01 6371244 6374096 Cca02g01442 02 32991514 32993370 PCT