Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca02g01436 | ATGGTAAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCCGAAAAAGGGTTCGGTCAAAGGAGGGAGTCTCTGATGACTCGGACGAGGACTATGTGCTTTCAGATGAAGGTAAAGACGCATCTGACTCATTAGATGGATGTGCGTCAGAGGAGAGTTTTGATAGTTTTATGGAAGATGAGGAGGAGGCAGAATTTCAAAGAGTGAGGAATTCCAATAGGTCCAAGGCAAAGAAGGGCATTTTTGGTCAGCGGAAAAATGCAAGTAAAAAATCACACAAGAGGGGAAGGATTACATATGCAgaagaagatgaggaggaggagttagatgaagagttagaggaggaggaggaggaggaggaattagaagaagagttagaagaagaagaggaggaggaagagttagagttagaggaagaggaagaggaagaatacaaagaggaggaggaggaggaAATTCAAGAAGTGAGAAATTTCAATAGGTCAAAGGCCAAAAATGGTGTATGTGGTAAGAAAAGAAGTGCTGGTAAAATCTCCCAAAAGAGGGGAAGGAAAATACGTGCTGAACAACTGGAAGAAGAGGAGGAGGAGGAGGAGGAGAAACTAGGGGAGGAGGAGGAGGAGAAGGTGAAAAGAGGTGGAGATGAGGAAGAGGAGAAAGAGAGAGATGGGGAGGATGAAGATTTTGACTATGATGACGAGGATGATGAATTTTTGCCAGAGGAAGAAGATTATTCAGATGAAGAGGATGAAATGAGGGGAGGAAAGAAGAAAAATGATGGAATGAAAATGGACAAGAAGGTTTTGCAGAAGAAAAGGACCTCTGTGGTTTCTACCAGAGGTCGAAAAAGGCGGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAACAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGAAAAATGTGATGATGAAGATGAGTTTATAGATAATGGCCCATCCATCAGGACAACAAATAGGAGAAAAAGGGGCCAGAAGAGAAGGGTGCTTCTTTCAGATTCAGATTATGCATCTTCTGGATCATCTGATTTTGACTTTACCATATCTGAAGAAGAGAGAGAGCAGGTGAGAGAAGCCAAGAGATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATGCCATATTATAAATAATGAAGAGGTTGCTGTTCATGAGTATCAACATCAGCAGCGGAAGCCTCCAGGTCGGAAGGGCAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAAGTGGGAAAGCAAGTGTGTGGTATTTGTCTATCTGAAGAAGATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAGTCTCGTTGTCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCTAGGTCAACGACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCGGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTCATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCAGGAAGTTCCTGAAGGTAATTGGTATTGTAATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGACTGAACCAAGGGTGACAATCCAGAGCCTTCCTGTTAGACCACCCCCTGTTCTACGAGAAAGTATAGATCTCAACTTGATTTCATCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGCATCTTCCATCTTCTAGATTTAGTAGCAGAAGTGTTGAAGGAGCTTCTCCTGTATCTGGAGGGGCACCCACTTTATCAGAGAGACGGTGGATACACCGTCAAATTCAACAACTACTTTCAATAGATAGGATGGCTTCTACACCTGGCAGAACCAATGGAATTTCAGCTACCAGTTCAACTAGTAACTTATACAGCCCTCAAATTGATCAAAGTAGGGGAGTCACCACTCTACATGCAAGGACACAGGATGTGGGAACATCATACCACACATTTTTTGAGGAGAGTCTATGCAACAATACCTCTCCATTAATGCAAAATGGAGCATTATGGCAAGGACTTATGGCGACACCCCCAGTACCAGGTTGTGAGCAAGTTCATCAGTTCAGCAGATCAAACATTGTTCCTGATGGTGGCTTGTCTCCTGCTGTCAAAGAAGAGAGTAACTTTCACATTGCAAAGGAGCAGTTGCAATCAATGGTTAAAAGCCACCTGAAGAGCTTGTCCCAACATATTGAGTTAGGTTAG | 2400 | 0.4021 | MVRGGRFSGKRNFRKRVRSKEGVSDDSDEDYVLSDEGKDASDSLDGCASEESFDSFMEDEEEAEFQRVRNSNRSKAKKGIFGQRKNASKKSHKRGRITYAEEDEEEELDEELEEEEEEEELEEELEEEEEEEELELEEEEEEEYKEEEEEEIQEVRNFNRSKAKNGVCGKKRSAGKISQKRGRKIRAEQLEEEEEEEEEKLGEEEEEKVKRGGDEEEEKERDGEDEDFDYDDEDDEFLPEEEDYSDEEDEMRGGKKKNDGMKMDKKVLQKKRTSVVSTRGRKRRSSRASKKPLRNKRRKNGRLRKKEKCDDEDEFIDNGPSIRTTNRRKRGQKRRVLLSDSDYASSGSSDFDFTISEEEREQVREAKRLCGNLRNNLRSSCHIINNEEVAVHEYQHQQRKPPGRKGKEKIEEPQGRKGKEKVEDLKSEVGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGQEVPEGNWYCNGCRPVALGSSSSQVQEGVTEPRVTIQSLPVRPPPVLRESIDLNLISSPRAAFNQGFGHLPSSRFSSRSVEGASPVSGGAPTLSERRWIHRQIQQLLSIDRMASTPGRTNGISATSSTSNLYSPQIDQSRGVTTLHARTQDVGTSYHTFFEESLCNNTSPLMQNGALWQGLMATPPVPGCEQVHQFSRSNIVPDGGLSPAVKEESNFHIAKEQLQSMVKSHLKSLSQHIELG | 799 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca02g01436 | 799 | SUPERFAMILY | RING/U-box | 433 | 482 | - | - | |
Cca02g01436 | 799 | CDD | RING-HC_Topors | 434 | 476 | - | - | |
Cca02g01436 | 799 | SUPERFAMILY | FYVE/PHD zinc finger | 496 | 572 | IPR011011 | - | |
Cca02g01436 | 799 | MobiDBLite | consensus disorder prediction | 165 | 180 | - | - | |
Cca02g01436 | 799 | MobiDBLite | consensus disorder prediction | 304 | 318 | - | - | |
Cca02g01436 | 799 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 498 | 574 | IPR013083 | - | |
Cca02g01436 | 799 | MobiDBLite | consensus disorder prediction | 275 | 303 | - | - | |
Cca02g01436 | 799 | MobiDBLite | consensus disorder prediction | 218 | 248 | - | - | |
Cca02g01436 | 799 | Coils | Coil | 98 | 161 | - | - | |
Cca02g01436 | 799 | Coils | Coil | 180 | 210 | - | - | |
Cca02g01436 | 799 | MobiDBLite | consensus disorder prediction | 249 | 271 | - | - | |
Cca02g01436 | 799 | Pfam | PHD-finger | 526 | 572 | IPR019787 | - | |
Cca02g01436 | 799 | Coils | Coil | 356 | 376 | - | - | |
Cca02g01436 | 799 | PANTHER | F18C1.6 PROTEIN | 1 | 127 | - | - | |
Cca02g01436 | 799 | PANTHER | F18C1.6 PROTEIN | 128 | 798 | - | - | |
Cca02g01436 | 799 | MobiDBLite | consensus disorder prediction | 72 | 93 | - | - | |
Cca02g01436 | 799 | MobiDBLite | consensus disorder prediction | 1 | 335 | - | - | |
Cca02g01436 | 799 | ProSiteProfiles | Zinc finger RING-type profile. | 434 | 476 | IPR001841 | - | |
Cca02g01436 | 799 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 411 | 497 | IPR013083 | - | |
Cca02g01436 | 799 | SMART | ring_2 | 434 | 475 | IPR001841 | - | |
Cca02g01436 | 799 | MobiDBLite | consensus disorder prediction | 392 | 422 | - | - | |
Cca02g01436 | 799 | ProSitePatterns | Zinc finger RING-type signature. | 453 | 462 | IPR017907 | - | |
Cca02g01436 | 799 | PANTHER | F18C1.6 PROTEIN | 1 | 127 | - | - | |
Cca02g01436 | 799 | PANTHER | F18C1.6 PROTEIN | 128 | 798 | - | - | |
Cca02g01436 | 799 | SMART | PHD_3 | 526 | 571 | IPR001965 | - | |
Cca02g01436 | 799 | ProSiteProfiles | Zinc finger PHD-type profile. | 524 | 573 | IPR019787 | - | |
Cca02g01436 | 799 | Pfam | Ring finger domain | 433 | 476 | IPR001841 | - | |
Cca02g01436 | 799 | MobiDBLite | consensus disorder prediction | 102 | 150 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca02g01436 | Cca-Chr2 | 32899981 | 32904102 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca02g01436 | 434 | 479 | C3H Transcription Factor Family | AT2G39100 | 43.478 | 2.20e-08 | 54.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Cca02g01436 | PHD | 2.5e-09 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca02g01436 | - | - | gmx:100797448 | 1130.16 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca02g01436 | 02 | 32899981 | 32904102 | Cca02g01436 | 02 | 32899981 | 32904102 | ECH |