Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01436 ATGGTAAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCCGAAAAAGGGTTCGGTCAAAGGAGGGAGTCTCTGATGACTCGGACGAGGACTATGTGCTTTCAGATGAAGGTAAAGACGCATCTGACTCATTAGATGGATGTGCGTCAGAGGAGAGTTTTGATAGTTTTATGGAAGATGAGGAGGAGGCAGAATTTCAAAGAGTGAGGAATTCCAATAGGTCCAAGGCAAAGAAGGGCATTTTTGGTCAGCGGAAAAATGCAAGTAAAAAATCACACAAGAGGGGAAGGATTACATATGCAgaagaagatgaggaggaggagttagatgaagagttagaggaggaggaggaggaggaggaattagaagaagagttagaagaagaagaggaggaggaagagttagagttagaggaagaggaagaggaagaatacaaagaggaggaggaggaggaAATTCAAGAAGTGAGAAATTTCAATAGGTCAAAGGCCAAAAATGGTGTATGTGGTAAGAAAAGAAGTGCTGGTAAAATCTCCCAAAAGAGGGGAAGGAAAATACGTGCTGAACAACTGGAAGAAGAGGAGGAGGAGGAGGAGGAGAAACTAGGGGAGGAGGAGGAGGAGAAGGTGAAAAGAGGTGGAGATGAGGAAGAGGAGAAAGAGAGAGATGGGGAGGATGAAGATTTTGACTATGATGACGAGGATGATGAATTTTTGCCAGAGGAAGAAGATTATTCAGATGAAGAGGATGAAATGAGGGGAGGAAAGAAGAAAAATGATGGAATGAAAATGGACAAGAAGGTTTTGCAGAAGAAAAGGACCTCTGTGGTTTCTACCAGAGGTCGAAAAAGGCGGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAACAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGAAAAATGTGATGATGAAGATGAGTTTATAGATAATGGCCCATCCATCAGGACAACAAATAGGAGAAAAAGGGGCCAGAAGAGAAGGGTGCTTCTTTCAGATTCAGATTATGCATCTTCTGGATCATCTGATTTTGACTTTACCATATCTGAAGAAGAGAGAGAGCAGGTGAGAGAAGCCAAGAGATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATGCCATATTATAAATAATGAAGAGGTTGCTGTTCATGAGTATCAACATCAGCAGCGGAAGCCTCCAGGTCGGAAGGGCAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAAGTGGGAAAGCAAGTGTGTGGTATTTGTCTATCTGAAGAAGATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAGTCTCGTTGTCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCTAGGTCAACGACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCGGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTCATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCAGGAAGTTCCTGAAGGTAATTGGTATTGTAATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGACTGAACCAAGGGTGACAATCCAGAGCCTTCCTGTTAGACCACCCCCTGTTCTACGAGAAAGTATAGATCTCAACTTGATTTCATCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGCATCTTCCATCTTCTAGATTTAGTAGCAGAAGTGTTGAAGGAGCTTCTCCTGTATCTGGAGGGGCACCCACTTTATCAGAGAGACGGTGGATACACCGTCAAATTCAACAACTACTTTCAATAGATAGGATGGCTTCTACACCTGGCAGAACCAATGGAATTTCAGCTACCAGTTCAACTAGTAACTTATACAGCCCTCAAATTGATCAAAGTAGGGGAGTCACCACTCTACATGCAAGGACACAGGATGTGGGAACATCATACCACACATTTTTTGAGGAGAGTCTATGCAACAATACCTCTCCATTAATGCAAAATGGAGCATTATGGCAAGGACTTATGGCGACACCCCCAGTACCAGGTTGTGAGCAAGTTCATCAGTTCAGCAGATCAAACATTGTTCCTGATGGTGGCTTGTCTCCTGCTGTCAAAGAAGAGAGTAACTTTCACATTGCAAAGGAGCAGTTGCAATCAATGGTTAAAAGCCACCTGAAGAGCTTGTCCCAACATATTGAGTTAGGTTAG 2400 0.4021 MVRGGRFSGKRNFRKRVRSKEGVSDDSDEDYVLSDEGKDASDSLDGCASEESFDSFMEDEEEAEFQRVRNSNRSKAKKGIFGQRKNASKKSHKRGRITYAEEDEEEELDEELEEEEEEEELEEELEEEEEEEELELEEEEEEEYKEEEEEEIQEVRNFNRSKAKNGVCGKKRSAGKISQKRGRKIRAEQLEEEEEEEEEKLGEEEEEKVKRGGDEEEEKERDGEDEDFDYDDEDDEFLPEEEDYSDEEDEMRGGKKKNDGMKMDKKVLQKKRTSVVSTRGRKRRSSRASKKPLRNKRRKNGRLRKKEKCDDEDEFIDNGPSIRTTNRRKRGQKRRVLLSDSDYASSGSSDFDFTISEEEREQVREAKRLCGNLRNNLRSSCHIINNEEVAVHEYQHQQRKPPGRKGKEKIEEPQGRKGKEKVEDLKSEVGKQVCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGQEVPEGNWYCNGCRPVALGSSSSQVQEGVTEPRVTIQSLPVRPPPVLRESIDLNLISSPRAAFNQGFGHLPSSRFSSRSVEGASPVSGGAPTLSERRWIHRQIQQLLSIDRMASTPGRTNGISATSSTSNLYSPQIDQSRGVTTLHARTQDVGTSYHTFFEESLCNNTSPLMQNGALWQGLMATPPVPGCEQVHQFSRSNIVPDGGLSPAVKEESNFHIAKEQLQSMVKSHLKSLSQHIELG 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01436 799 SUPERFAMILY RING/U-box 433 482 - -
Cca02g01436 799 CDD RING-HC_Topors 434 476 - -
Cca02g01436 799 SUPERFAMILY FYVE/PHD zinc finger 496 572 IPR011011 -
Cca02g01436 799 MobiDBLite consensus disorder prediction 165 180 - -
Cca02g01436 799 MobiDBLite consensus disorder prediction 304 318 - -
Cca02g01436 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 574 IPR013083 -
Cca02g01436 799 MobiDBLite consensus disorder prediction 275 303 - -
Cca02g01436 799 MobiDBLite consensus disorder prediction 218 248 - -
Cca02g01436 799 Coils Coil 98 161 - -
Cca02g01436 799 Coils Coil 180 210 - -
Cca02g01436 799 MobiDBLite consensus disorder prediction 249 271 - -
Cca02g01436 799 Pfam PHD-finger 526 572 IPR019787 -
Cca02g01436 799 Coils Coil 356 376 - -
Cca02g01436 799 PANTHER F18C1.6 PROTEIN 1 127 - -
Cca02g01436 799 PANTHER F18C1.6 PROTEIN 128 798 - -
Cca02g01436 799 MobiDBLite consensus disorder prediction 72 93 - -
Cca02g01436 799 MobiDBLite consensus disorder prediction 1 335 - -
Cca02g01436 799 ProSiteProfiles Zinc finger RING-type profile. 434 476 IPR001841 -
Cca02g01436 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 497 IPR013083 -
Cca02g01436 799 SMART ring_2 434 475 IPR001841 -
Cca02g01436 799 MobiDBLite consensus disorder prediction 392 422 - -
Cca02g01436 799 ProSitePatterns Zinc finger RING-type signature. 453 462 IPR017907 -
Cca02g01436 799 PANTHER F18C1.6 PROTEIN 1 127 - -
Cca02g01436 799 PANTHER F18C1.6 PROTEIN 128 798 - -
Cca02g01436 799 SMART PHD_3 526 571 IPR001965 -
Cca02g01436 799 ProSiteProfiles Zinc finger PHD-type profile. 524 573 IPR019787 -
Cca02g01436 799 Pfam Ring finger domain 433 476 IPR001841 -
Cca02g01436 799 MobiDBLite consensus disorder prediction 102 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01436 Cca-Chr2 32899981 32904102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01436 434 479 C3H Transcription Factor Family AT2G39100 43.478 2.20e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca02g01436 PHD 2.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01436 - - gmx:100797448 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01436 02 32899981 32904102 Cca02g01436 02 32899981 32904102 ECH