Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01433 ATGTCGTATCGCCCGAGCGGGAACTCCAGGACCGAGGTCCGCCGGAACCGCTACAAGGTGGCGGTGGACGCGGAGGAAGGCCGGAGACGGCGAGAAGACACCATGGTCGAGATCCGCAAGAACCGCAGAGAAGAGAGCTTGCAGAAGAAGAGGCGCGAGGGGCTCCAGCCTCAGCAGATGCCTGCCTCCGTTCACTCTACTTTGGTAGAGAAGAAGTTGGAACACCTGCCATCCATGGTTGCTGGTGTTTGGACTGATGATAATAACCTGCAACTCGAGGCCACCACTCAGTTTCGGAAGCTGCTTTCGATTGAACGTAGTCCTCCAATTGAGGAGGTTATACAGACCGGTGTAGTTTCTCGCTTTGTTGAGTTCCTGATGAGGGAAGACTTTCCGCAGCTTCAGTTTGAGGCTGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAGAACACCAAGGTGGTGATTGACCACGGGGCTGTCCCGATTTTTGTGAAGCTACTTGCTTCTCCTAGTGACGATGTTCGTGAACAGGCAGTGTGGGCATTAGGGAATGTCGCTGGGGATTCTCCCAGATGCCGTGATCTTGTTCTTAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATGAACATGCTAAGCTTTCCATGCTTAGAAATGCTACCTGGACGCTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCCGCCTTATCCATTCAAACGACGAAGAAGTCTTGACTGATGCGTGTTGGGCCCTATCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTACTGCACCCATCCCCTTCAGTGCTAATTCCTGCTCTTCGAACTGTTGGAAATATAGTCACCGGGGATGATATGCAAACTCAGATCATCATCAACCATCAGGCTCTACCTTGCCTTCTGAATCTGTTGACCAATAATTATAAGAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGAAATAAACTGCAGATTCAGGCAGTGATTGAGGCTAACATAATTGCTCCTTTGGTCAACCTGCTTCAAAATGCTGAGTTTGATATCAAGAAGGAGGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAGTACCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGGATTGTAACAGTTTGTCTGGAAGGCCTTGAGAACATCTTGAAGGTAGGAGAAGCTGATAAAAATATAGGTAATACTGGTGACGTGAATCTGTATGCCCAAATGATTGATGATGCTGAGGGGCTGGAGAAAATTGAGAACCTGCAGAGTCATGACAACACGGAGATTTATGAAAAAGCGGTGAAGATTCTTGAGACATACTGGTTGGAGGAGGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGTAACAGTGAGGCTCCTTCTGTGCCTTCCGGTGGATTCAACTTTAATTAG 1599 0.4753 MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQMPASVHSTLVEKKLEHLPSMVAGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQIIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKLQIQAVIEANIIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGNSEAPSVPSGGFNFN 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01433 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Cca02g01433 532 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Cca02g01433 532 MobiDBLite consensus disorder prediction 10 52 - -
Cca02g01433 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Cca02g01433 532 Pfam Atypical Arm repeat 458 504 IPR032413 -
Cca02g01433 532 Gene3D - 12 52 IPR036975 GO:0006606
Cca02g01433 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Cca02g01433 532 MobiDBLite consensus disorder prediction 501 532 - -
Cca02g01433 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Cca02g01433 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Cca02g01433 532 MobiDBLite consensus disorder prediction 1 63 - -
Cca02g01433 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Cca02g01433 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Cca02g01433 532 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Cca02g01433 532 Pfam Armadillo/beta-catenin-like repeat 362 399 IPR000225 GO:0005515
Cca02g01433 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Cca02g01433 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Cca02g01433 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Cca02g01433 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Cca02g01433 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Cca02g01433 532 SMART arm_5 234 273 IPR000225 GO:0005515
Cca02g01433 532 SMART arm_5 360 400 IPR000225 GO:0005515
Cca02g01433 532 SMART arm_5 317 358 IPR000225 GO:0005515
Cca02g01433 532 SMART arm_5 106 147 IPR000225 GO:0005515
Cca02g01433 532 SMART arm_5 149 189 IPR000225 GO:0005515
Cca02g01433 532 SMART arm_5 275 315 IPR000225 GO:0005515
Cca02g01433 532 SMART arm_5 403 443 IPR000225 GO:0005515
Cca02g01433 532 SMART arm_5 190 232 IPR000225 GO:0005515
Cca02g01433 532 PANTHER IMPORTIN SUBUNIT ALPHA 4 522 - -
Cca02g01433 532 MobiDBLite consensus disorder prediction 508 532 - -
Cca02g01433 532 Gene3D - 74 497 IPR011989 -
Cca02g01433 532 PANTHER IMPORTIN ALPHA 4 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01433 Cca-Chr2 32874911 32882436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01433 263 465 U-box Gene Family AT5G67340 22.927 5.63e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01433 K15042 - gmx:100789135 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02894 03 50254425 50259744 Cca02g01433 02 32874911 32882436 ECH
Cca11g02726 11 54638094 54642320 Cca02g01433 02 32874911 32882436 ECH
Cca02g01433 02 32874911 32882436 Cca02g01433 02 32874911 32882436 ECH
Cca03g02894 03 50254425 50259744 Cca02g01433 02 32874911 32882436 PCT