Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01430 ATGGGAAGCAGTAGCAGGAAGAAGCAGCAACAAGATCTGGAGTTAGAAAAAGTTCGCTTAATCAGTTTAGCTCTCGAATTCGGCTTCGACGAATCCTCCGCCAACAAATGTCTCCACCGTCTCATCGCTCTCTACGGCGAAGACGGTCGCGATTTCGTCACCGTCGAGCACTGCGGCGACGATTTCCTCGCGGCTCTGGCGGAGTCCATGCAGGCCACCGAGGATTGGGATGACCTGCAGGAAATGGAATCGCAAGCGTGTGGAACCTTGACGCACGTGCTCGACAAAGCTTCTGCCACGTGTGCCGATGCGGATAACGACGATGCTTCCAGAAGCTTCGTTAACGTCGTTGACGACTCGCCTCTACCGCAGAGACGCAAACACCACACTAATGTCGTGGAGTTGGTTTCGAGTGACGATGAGGACATGAAATCTGTGGATTACAGAAGTGGCATCCCTCAAGGCTTGGTTTCATCAACGTCCAGCAAAATGCAATCCACCTTTGCATCAAAAGATAAAATCGCTACTCTCACTTATGAAGAATTGCAAGCACTAGATGATATTGAATTGGCAAACGTAGTTATCTTTGGTAATAGGACATTTCGACCGTTGCAACATCAAGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCTTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTTACTGTAGTTGTGTCTCCGTTACTTTCACTCATCCAGGATCAGATAATAACATTAAACCTCAAGTTTGGAATACCTGCTACTTTTTTAAATTCTCAACAAACTGCTTCCCAGGCCACAGCTGTCCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAGCTCTTGTATGTGACACCTGAGAGAATTGCTGGCAACCAATCATTTCTCGAGATTCTAAAATGCATGCATCAGAAGGGACAGCTGGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCAACACTTTCCAGGTGTACCTGTTATGGCATTGACTGCCACTGCAACCCATGCAGTTCGCGAGGACATATTAAATGCTTTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACCGACCAAATTTGAAGTATGAAGTGATTGGTAAGACAAAGGAGCCACTAAAGCAACTTGGACAGTTGCTAATTGATCGCTTCAAGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAATGAATGTGTTGAGGTCTCCAAATTTTTGAATGAGAAATGTAAGATCAAGACGGTGTATTACCATGCTGGCTTGGCTGCCCGCCAAAGAGTAGCTGTTCAAAAGAAATGGCATGACGGGGAGGTTCATATTGTATGTGCAACTATTGCCTTTGGAATGGGGATCGACAAACCTGATGTTCGCTTTGTCATCCACAATACAATGTCAAAATCAATCGAGAGCTATTATCAAGAATCTGGAAGGGCTGGAAGGGATAATCTTCCTGCAGTTTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAAATAAAGGTTGAATGCCGGAGGCAAACATTACTCAAACACTTTGGAGAATCTTTTGACAGAAAGGTCTGCAAGTACGGAGCTAGCCCCTGTGATAATTGTCTCAAGACGGCATTATGA 1809 0.445 MGSSSRKKQQQDLELEKVRLISLALEFGFDESSANKCLHRLIALYGEDGRDFVTVEHCGDDFLAALAESMQATEDWDDLQEMESQACGTLTHVLDKASATCADADNDDASRSFVNVVDDSPLPQRRKHHTNVVELVSSDDEDMKSVDYRSGIPQGLVSSTSSKMQSTFASKDKIATLTYEELQALDDIELANVVIFGNRTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPGVPVMALTATATHAVREDILNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKQLGQLLIDRFKNQCGIVYCLSKNECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMAQAKKMQQYCEIKVECRRQTLLKHFGESFDRKVCKYGASPCDNCLKTAL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01430 602 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 324 333 IPR002464 -
Cca02g01430 602 PANTHER DNA HELICASE RECQ FAMILY MEMBER 33 600 - -
Cca02g01430 602 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 195 600 IPR004589 GO:0004386|GO:0006310
Cca02g01430 602 CDD SF2_C_RecQ 393 526 - -
Cca02g01430 602 Pfam Helicase conserved C-terminal domain 409 516 IPR001650 -
Cca02g01430 602 SMART helicmild6 435 517 IPR001650 -
Cca02g01430 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 565 IPR001650 -
Cca02g01430 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 385 IPR014001 -
Cca02g01430 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 538 IPR027417 -
Cca02g01430 602 Gene3D - 158 392 IPR027417 -
Cca02g01430 602 SMART ultradead3 197 401 IPR014001 -
Cca02g01430 602 Gene3D - 393 601 IPR027417 -
Cca02g01430 602 Pfam RecQ zinc-binding 529 598 IPR032284 -
Cca02g01430 602 Pfam DEAD/DEAH box helicase 203 371 IPR011545 GO:0003676|GO:0005524
Cca02g01430 602 PANTHER BLOOM SYNDROME PROTEIN 33 600 - -
Cca02g01430 602 CDD DEXHc_RecQ 195 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01430 Cca-Chr2 32849069 32854858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01430 415 515 Eukaryotic Initiation Factors Gene Family AT5G11170 30.693 1.08e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01430 K10899 - gmx:100806070 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01430 02 32849069 32854858 Cca02g01430 02 32849069 32854858 ECH