Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01416 ATGGAAGATTTTTACAAGTTGAACCCTCTTCTGTCTTGTCCTGAGGATGTTGTTAGAGAAGTTAACGTCAACGCTTCTGCTACTGATGCTTCTGAATTAAATATAGGACTTGTGGCCAATAACTTCCTTCACCTCCAAGAACCCCAAACATCGGATCGCTTCATCAAGAACCAGATCGCCACTCACCCTCTCTATCCAAATCTAGTATTTGCTTACATAGAATGTCGAAAGGTTGGAGCACCGCCAGAACTGGTTTCAATTCTTGAAGAAATATCTTGTGAAAGCCATTCAACGGATTCTCTTCGTGAGATTGGTGATGATCCTGAGCTTGACGAGTTCATGGAGTCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCAACGAAGCGACCTTATTTTTGTGTAATATCGAATCACAACTCAGCAATCTTTGTAATGGAACGCTAACAACACCATTGGATAACAACCGCTCAGACGAAGCAACTGGGACATCAGAGGATGAATTAAGTCGGGAGAAGGTGGAAATAGTTGAAGGTTACGAATCTTCTACTTCACGTCTAGGTGATCAAGAGCTCAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTTGTAGCTTGAGAAAGGAATTTCTAAAGAAAAGGAAAAAGAGTAAGCTACCAAAGGATGCAAGGATGATACTGATGGACTGGTGGAACACACACTATAGGTGGCCTTATCCTACGGTAATTGAATTTAATGCCAAGAAGTACACATATCAATATATATTGTGTCTTGTTCATTAA 801 0.407 MEDFYKLNPLLSCPEDVVREVNVNASATDASELNIGLVANNFLHLQEPQTSDRFIKNQIATHPLYPNLVFAYIECRKVGAPPELVSILEEISCESHSTDSLREIGDDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCNIESQLSNLCNGTLTTPLDNNRSDEATGTSEDELSREKVEIVEGYESSTSRLGDQELKEMLLRKYGGYLCSLRKEFLKKRKKSKLPKDARMILMDWWNTHYRWPYPTVIEFNAKKYTYQYILCLVH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01416 266 Pfam KNOX1 domain 55 96 IPR005540 GO:0003677|GO:0005634
Cca02g01416 266 Pfam ELK domain 196 217 IPR005539 GO:0003677
Cca02g01416 266 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 248 - -
Cca02g01416 266 Gene3D - 214 254 - -
Cca02g01416 266 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 248 - -
Cca02g01416 266 ProSiteProfiles ELK domain profile. 196 216 IPR005539 GO:0003677
Cca02g01416 266 SMART KNOX1_2 53 97 IPR005540 GO:0003677|GO:0005634
Cca02g01416 266 SMART KNOX2_2 100 151 IPR005541 GO:0003677|GO:0005634
Cca02g01416 266 Pfam KNOX2 domain 104 150 IPR005541 GO:0003677|GO:0005634
Cca02g01416 266 SMART ELK_2 196 217 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01416 Cca-Chr2 32697076 32703029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01416 55 247 Homeobox Transcription Factor Family AT1G70510 49.254 1.74e-55 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01416 - - gmx:102660463 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01416 02 32697076 32703029 Cca02g01416 02 32697076 32703029 ECH
Cca03g02879 03 50114716 50120799 Cca02g01416 02 32697076 32703029 PCT