Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01415 ATGGAAGATTTTTACAAGTTGAACCCTCTTCTGTCTTGCCCTGAGGATGTTGTTAGAGAAGTCAACGTTACTGCTGCATCTGAATTAAATCTAGGACTTGTGGCTAATAACTTCCTTCACCTCCAACACCCCCAAACTTCGGATCGCTTCATCAAGACTCAGATCTCTACTCACCCTCTCTTTCCAAATCTAGTATCTGCTTACATAGACTGTCGGAAGGTTGGAGCACCACCAGAACTAGCTTCAATTCTTGAAGAAATATCCTGTGAAAGACATTCTACGGATTCTGTTCGTGAGATAGGTGATGATCCTGAGCTTGACGAGTTTATGGAGTCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCAATGAAGCCACCTTGTTTTTATGTAATATCGAATCACAACTCAGCAATCTCTGCAAGGGAACACTAACAATGCCACTGGAGAACAATCGCTCAGATGAAGCAGCTGGGACATCAGAGGATGAATTAAATTGGGAGAAAGTGGAAGCAGTTGAAGGTTACGAATCTTCTGCCCCACGTCCAGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAATACGGTGGCTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAAAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGATACTCATGGACTGGTGGAACGCCCATTATAGATGGCCTTATCCTACGGAGGAGGAGAAAGTGCAACTATCAGAAATGACTGGACTTGATCAAAAGCAGATCAACAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCATCTGAGGACATGCGATTTGCCATTATGGATGGTGTAAGTGGCAGCAACATAGGACAAACTATGTAA 891 0.4276 MEDFYKLNPLLSCPEDVVREVNVTAASELNLGLVANNFLHLQHPQTSDRFIKTQISTHPLFPNLVSAYIDCRKVGAPPELASILEEISCERHSTDSVREIGDDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCNIESQLSNLCKGTLTMPLENNRSDEAAGTSEDELNWEKVEAVEGYESSAPRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARMILMDWWNAHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSNIGQTM 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01415 296 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Cca02g01415 296 SMART HOX_1 214 279 IPR001356 GO:0003677
Cca02g01415 296 ProSitePatterns 'Homeobox' domain signature. 250 273 IPR017970 GO:0000981|GO:0006355
Cca02g01415 296 Gene3D - 210 282 - -
Cca02g01415 296 SUPERFAMILY Homeodomain-like 214 286 IPR009057 -
Cca02g01415 296 SMART KNOX2_2 96 147 IPR005541 GO:0003677|GO:0005634
Cca02g01415 296 Pfam KNOX1 domain 51 91 IPR005540 GO:0003677|GO:0005634
Cca02g01415 296 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 20 286 - -
Cca02g01415 296 CDD homeodomain 224 276 IPR001356 GO:0003677
Cca02g01415 296 SMART KNOX1_2 49 93 IPR005540 GO:0003677|GO:0005634
Cca02g01415 296 SMART ELK_2 192 213 IPR005539 GO:0003677
Cca02g01415 296 Pfam ELK domain 192 213 IPR005539 GO:0003677
Cca02g01415 296 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Cca02g01415 296 Pfam KNOX2 domain 100 146 IPR005541 GO:0003677|GO:0005634
Cca02g01415 296 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Cca02g01415 296 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 20 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01415 Cca-Chr2 32663715 32668563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01415 51 290 Homeobox Transcription Factor Family AT1G23380 54.400 4.97e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca02g01415 KNOX2 6.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01415 - - gmx:102660463 506.138