Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01413 ATGGATTTCCAGGGGTTCTTAAACGAGTTGCAGGATTGGGAACTTTCTAGAAAGGATAAGGCGCCAACAATGAAGTCACAAAAGGAAAATGCTTCATCTTCTCGACATATTGGATCTGTTGGTGTGGATAAGGCATCAAGAGGAGATGCTATTTCTTTTGACCGGGCAAGAAATTCTCCTGGGCAGTATGATTTATCAAGAATTAGTGATGCTTTCAATGGTGTGCACAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCCGAGAAGGACCTGGGTAATGAGTTTTTCAAGCAGAAAAAGTTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCTAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTTGATGATCGTTATATAAAAGCATACTCTCGGAGAGCAACAGCTAGAAAAGAACTTGGAAAAATTAAAGAATCAATGGAGGATGCTGAATTTGCATTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAATATGCTGATGCCAAGTCTTTGTATGAGAAAAATGTTCTCCAGAAAGCATCAGGAGCTCTAAGAAACACTGTACAGGGGACTCAAAAAGTGGGAAAGTCAGAAGAAAAAGTTAATGGAGGCAGCATCCAGCCCATTTCACATGGCACTCAAAAGTCTGGGCCGGCTGAAGCTCATCATCATCAAAAGGGTAATGAGTCACAAATACCTATTAAAGAATCACTCATAATGGAGGAGTTTGGTTCCAGAGATACAAAAGCCAGAAGCAGGCCTCAAGCACAAGAACGTCATGGTTCTAAGGAGGGTTTGAGTGCAAGCAACAGTTTTGAGCAGAGAAATCGCAAAATTACTAAGCAGGAAATAAAAGCATCTGTTCAACAGCTTGCTTCTCAAGCTGCATCTAGAGCCATGGCTGAAGCTGCGAAAAACATAACACCACCAACAACAGCTTATCAGTTTGAGGCCTCTTGGAGAGCATTTTCAGGTGATATTGCTCTGCAGGCTCGTCTATTGAAGGCTATATCTCCCCACGAATTACCAAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTAATTGACATCATCAAGTGTCTTGCATCGTTTTCCACTGAAGACATGGATCTGGTTGTTAGTTATATGGAGCATCTGACCAAGATACCAAGATTTGATGTGATTGTAATGTGCCTTTCATCAACAAATAAGGATGGTATGCAATTTTTATATTAG 1305 0.4092 MDFQGFLNELQDWELSRKDKAPTMKSQKENASSSRHIGSVGVDKASRGDAISFDRARNSPGQYDLSRISDAFNGVHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKNVLQKASGALRNTVQGTQKVGKSEEKVNGGSIQPISHGTQKSGPAEAHHHQKGNESQIPIKESLIMEEFGSRDTKARSRPQAQERHGSKEGLSASNSFEQRNRKITKQEIKASVQQLASQAASRAMAEAAKNITPPTTAYQFEASWRAFSGDIALQARLLKAISPHELPKIFKNALSSTLLIDIIKCLASFSTEDMDLVVSYMEHLTKIPRFDVIVMCLSSTNKDGMQFLY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01413 434 MobiDBLite consensus disorder prediction 217 243 - -
Cca02g01413 434 Pfam Potential Monad-binding region of RPAP3 338 427 IPR025986 -
Cca02g01413 434 MobiDBLite consensus disorder prediction 217 302 - -
Cca02g01413 434 SMART tpr_5 87 120 IPR019734 GO:0005515
Cca02g01413 434 SMART tpr_5 121 153 IPR019734 GO:0005515
Cca02g01413 434 SMART tpr_5 154 187 IPR019734 GO:0005515
Cca02g01413 434 PANTHER OS05G0129900 PROTEIN 1 431 - -
Cca02g01413 434 SUPERFAMILY TPR-like 85 203 IPR011990 GO:0005515
Cca02g01413 434 MobiDBLite consensus disorder prediction 17 43 - -
Cca02g01413 434 ProSiteProfiles TPR repeat profile. 154 187 IPR019734 GO:0005515
Cca02g01413 434 ProSiteProfiles TPR repeat profile. 87 120 IPR019734 GO:0005515
Cca02g01413 434 MobiDBLite consensus disorder prediction 269 289 - -
Cca02g01413 434 Pfam Tetratricopeptide repeat 122 150 IPR019734 GO:0005515
Cca02g01413 434 Gene3D Tetratricopeptide repeat domain 79 185 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01413 49 191 Calmodulin-binding Proteins AT3G25230 26.415 8.99e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01413 K23002 - gmx:100784528 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01413 02 32628803 32634035 Cca02g01413 02 32628803 32634035 ECH