Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01410 ATGGAGAGCAAAGAGAAGAACATGGTTCCACCACCATTTCAGACCCTACTCGATGCAAGTGCTGGCGCGTCCCACGAACAACCATCTTCTCCTCATCATGACTCTCACACCTTCTACACTAAACTCACTGACTTGTTGGACTCTTCTGGATTCACTCTCATGTGTCCTACAAATCAAGCTGGATCTAGCAGCAGCAAAGGTCCACTTAAGAAGAAGCGGAATTTAATAGCTAGTTTACCACCTCGTATAATGGATATTGAAGATGGTCAGAAGGCCACAGGGATATCCAAGGACTTATCATGCCACATGACAGGGTTTGTGGAACAGCCTGTGTTTTTACTGCCACCCTCGAATGACAAAGAGATGAAGAGACGCCGCGGTGCTCCAAGTGGACGAAAGAATGCATATCAGATATTCCTCAAGCATGAATGTGCTCGATTGAAAACTTCTAATCTGGCCTCAGATGGTCAAAGAGTCCTACGTATGGCTATTGATGCATGGAGGAATATGTCTGAACTTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAGGAAGAAATTAAGGAAGCAATGATTAGTCACAATAAACAGCAGAGCAGCCAAGATACTAGGGAGGAGAAGTGGCCTAGTACTCTGCGTGGTGATTACCTTGTAACTTCACAACCTGAGGCAAATGAATCCCTTGTCAACAAAGCAACTGTTGGGTTAGCTCTTAAAATGACCGAAAAAGCGCCAAGGGATCCTTCATTTCTAATGGAATGGGATGGTTATTGTGCACTAGATTCACCAACTAGGGAATCTCAGTAA 813 0.444 MESKEKNMVPPPFQTLLDASAGASHEQPSSPHHDSHTFYTKLTDLLDSSGFTLMCPTNQAGSSSSKGPLKKKRNLIASLPPRIMDIEDGQKATGISKDLSCHMTGFVEQPVFLLPPSNDKEMKRRRGAPSGRKNAYQIFLKHECARLKTSNLASDGQRVLRMAIDAWRNMSELEKQPYVEESKKNKEEIKEAMISHNKQQSSQDTREEKWPSTLRGDYLVTSQPEANESLVNKATVGLALKMTEKAPRDPSFLMEWDGYCALDSPTRESQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01410 270 MobiDBLite consensus disorder prediction 193 224 - -
Cca02g01410 270 SUPERFAMILY HMG-box 113 193 IPR036910 -
Cca02g01410 270 MobiDBLite consensus disorder prediction 1 36 - -
Cca02g01410 270 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 62 257 - -
Cca02g01410 270 Gene3D High mobility group box domain 116 212 IPR036910 -
Cca02g01410 270 CDD HMGB-UBF_HMG-box 129 193 - -
Cca02g01410 270 SMART hmgende2 128 198 IPR009071 -
Cca02g01410 270 Pfam HMG-box domain 129 196 IPR009071 -
Cca02g01410 270 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 129 197 IPR009071 -
Cca02g01410 270 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 62 257 - -
Cca02g01410 270 Coils Coil 179 199 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca02g01410 HMG_box_2 7.9e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01410 - - var:108325455 233.802