Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01409 ATGGCTTCCTTCCTAGATTCAACTAATTCACACACCCTGCGAGAATCCAACCACAAGAAGCGCCGCAAAATCGGAGAACACGCCGCCGCCGTCCCGTGGAGATCCGACGCCGAGCACCGGATCTACTCGCGCCGCCTCGTCGAAGCACTCCGCCGCACTCCCTCGTCTCCGGCAAAGCCTAGAGCCGCCGGCCAGGTCCGCGATACCGCCGACCGAGTCCTCGCCGCCACCGCCAGAGGCCGGACGCGCTGGAGCCGCGCGATCCTCGGCCGCTGGAGGAAGCTCCGGACGCAACACAAGAAGGTCAAGAAGGCGTCGTCTAACGGATTGAAGAGAACGAGGATCGCCGGCGAGAGGAGGAACCGGTTACCGGCTGTGCAGAAGAAGGCGCGCGTTCTCGGCCGCTTGGTTCCCGGTTGCCGCAAGGTCTCGTTCCCGAACCTTCTCGAAGAAGCCACGGACTATATCTCCGCCTTGGAGATGCAAGTGCGAGCCATGACGACTCTCGCCGAACTACTCGCCGGCGCCGCGCCGGCCGGAGTCGCCGGCGCCGCGTTGAGTTGA 564 0.6472 MASFLDSTNSHTLRESNHKKRRKIGEHAAAVPWRSDAEHRIYSRRLVEALRRTPSSPAKPRAAGQVRDTADRVLAATARGRTRWSRAILGRWRKLRTQHKKVKKASSNGLKRTRIAGERRNRLPAVQKKARVLGRLVPGCRKVSFPNLLEEATDYISALEMQVRAMTTLAELLAGAAPAGVAGAALS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01409 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Cca02g01409 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 175 IPR036638 GO:0046983
Cca02g01409 187 MobiDBLite consensus disorder prediction 1 28 - -
Cca02g01409 187 CDD bHLH_AtIBH1_like 118 170 IPR044549 GO:0006355
Cca02g01409 187 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 13 186 IPR044660 GO:0006355
Cca02g01409 187 PANTHER TRANSCRIPTION FACTOR BHLH150 13 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01409 Cca-Chr2 32589166 32590225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01409 15 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 49.714 2.24e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01409 - - gmx:100783462 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01409 02 32589166 32590225 Cca02g01409 02 32589166 32590225 ECH