Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01407 ATGTCCCAGAACAAAGACAACGACCAATACGCCGTTCTTCTCTATTACAAGTACGCCGAAGTTCCCAACCTCGACGACCTCGCCACCTTCTACCGCTCCAACTGCTCCTCCCTCCGCCTCCTTGGCCGCGTTCGCCTCTCTTCCCGCGGTGTCAATGTCACCGTTGGCGCCAACTTATCCTCTCTCCACTCCCACATTGATGCCGTCAAAGCCTACAACGCATTCTTCCACGACACTGATTTCAAGCTCGCCACGTGTCATCACCCGCTTAACGACAAGGTTGCCAAGGAGTGCGGTTTCACTTCTCTCTCGATTAGGATCGTCGACGAGCTTGTCACTCTCGCTTCCCATCCACTGTTGAAGTCGCCAGATATCTCAAATGCTGGAAAACATCTCTCTGCACTTGATTTCCATTCTTCCCTCCACACCGCTAACAAGGAGAGTCCCGAAAACGGCCTCGTTTTACTTGATGCAAGGAATCTGTATGAAACAAGAATTGGCAAGTTTCATGTGCCAAATGTTGAAACCTTGGATCCACAGGTTAGGCAGTACAGTGATTTGTCCTCCTGGATAGATGATAACGGTGAGCGGTTGAGAGGGAAGAATATCCTCATGTATTGTACTGGTGGAATCAGGTGTGAAATGGCATCAGCGTATATTAGGTCAAAAGGTGCTGGGTTTGAGAATGTCTTTCAGTTATTTGGTGGCATACAACGGTATTTGGAGCAATTCCCAGATGGTGGTTTTTTCAAAGGAAAGAATTTTGTTTTTGATCACCGGATATCAGTTGGAAGTTCAGATGCTAATGTTATTGGTACCTGCCTTATTTGTCAATGTTCATTTGATGATTACTCTTCTCGCTGCCGGTGTACTTACTGCCGAATGCTTGTTTTAGTTTGTAGTAGTTGCCAGAATGAATCTACCCCATATGTTTGCGAGCTATGTCAGAAGCAGGGCAAGGCTGTTAGGTTAACGCAGTTAATTGAAAATGGTGAATCAAAAACATCATTGCCAGGTGTTGAGTTACAGGAATTTTCTTCAGATATTACATTTTTGCCTCAAGTGCCTAAGGGAGATGATCTAAGGATCTCAAGAAAACTGAGAATCTTGTGCCTGCATGGGTTTCGGCAGAATGCATCCAGCTTCAAAGGAAGAACATCATCACTAGCCAAGAAACTCAAGAAAATGACTGAATTTGTTTTTATTGATGCTCCTCATGAATTGCCATTTATTTATCAAACCCCTATCTCCGGGCTCAATGTGAATTGTGCATCAACATTGCCACCTAATCCTCCTCCACCTTCAGAGAATTGCAAGAAGAAGTTTGCATGGTTTGTGGCACCCAACTTTGATGAAAGTACTAGTGGGGTTGATTGGAAGGTAGCAGACGGCCCATTTGATCCACTTCAATACCAGCAGCAAACTGATGGCTATGATATTTCTCTATCACACTTGAAGAATGTGTTTTCCCAAGAAGGACCATTTGATGGAATCTTGGGATTTTCACAGGGAGCAGCAATGGCTGCCTTAGTATCTGCACAAGAAGCAAAGCTGAAAGGTGAAATGGACTTTAAATTTGTAGTCTTGTGCTCTGGTTTTGCTCTCAGGATGAAAGAGATGGAGTGTGGCCCTATCAAGTGCCCTTCTCTTCATATATTCGGTAATGAACATGGTAAAGACAGACAGATAGCCAACCAAGCTAGCAAGGAACTCGCTTCTCTATATGATAGTGATTGTTCTGTGATCGTTGAGCATGATTGTGGTCATATAATTCCTACCCGCTCCCCTTACATTGATGAGATCAAGGATTTCCTTGGGCGTTTTCTGTAA 1830 0.4437 MSQNKDNDQYAVLLYYKYAEVPNLDDLATFYRSNCSSLRLLGRVRLSSRGVNVTVGANLSSLHSHIDAVKAYNAFFHDTDFKLATCHHPLNDKVAKECGFTSLSIRIVDELVTLASHPLLKSPDISNAGKHLSALDFHSSLHTANKESPENGLVLLDARNLYETRIGKFHVPNVETLDPQVRQYSDLSSWIDDNGERLRGKNILMYCTGGIRCEMASAYIRSKGAGFENVFQLFGGIQRYLEQFPDGGFFKGKNFVFDHRISVGSSDANVIGTCLICQCSFDDYSSRCRCTYCRMLVLVCSSCQNESTPYVCELCQKQGKAVRLTQLIENGESKTSLPGVELQEFSSDITFLPQVPKGDDLRISRKLRILCLHGFRQNASSFKGRTSSLAKKLKKMTEFVFIDAPHELPFIYQTPISGLNVNCASTLPPNPPPPSENCKKKFAWFVAPNFDESTSGVDWKVADGPFDPLQYQQQTDGYDISLSHLKNVFSQEGPFDGILGFSQGAAMAALVSAQEAKLKGEMDFKFVVLCSGFALRMKEMECGPIKCPSLHIFGNEHGKDRQIANQASKELASLYDSDCSVIVEHDCGHIIPTRSPYIDEIKDFLGRFL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01407 609 Gene3D - 1 112 - -
Cca02g01407 609 Gene3D alpha/beta hydrolase 363 609 IPR029058 -
Cca02g01407 609 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 3 608 IPR020936 -
Cca02g01407 609 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 3 608 - -
Cca02g01407 609 Pfam Rhodanase C-terminal 251 316 IPR022111 -
Cca02g01407 609 SUPERFAMILY alpha/beta-Hydrolases 366 609 IPR029058 -
Cca02g01407 609 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 126 263 IPR036873 -
Cca02g01407 609 Pfam UPF0176 acylphosphatase like domain 10 110 IPR040503 -
Cca02g01407 609 ProSiteProfiles Rhodanese domain profile. 149 249 IPR001763 -
Cca02g01407 609 Gene3D - 121 278 IPR036873 -
Cca02g01407 609 SMART rhod_4 139 246 IPR001763 -
Cca02g01407 609 Pfam Serine hydrolase (FSH1) 364 600 IPR005645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01407 Cca-Chr2 32564370 32568660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01407 5 609 Sulfurtransferasese or Rhodanese AT1G09280 63.875 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01407 - - gmx:100786152 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01407 02 32564370 32568660 Cca02g01407 02 32564370 32568660 ECH