Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01398 ATGGCAGTTGAAGGAACCAGTTTGGATTCAAAAGCAGCGACGATTGTGATAAAGGATCTCCGATTCACTTACCCCGGCATCGGCGGCCATCCTCCGCCGGGTTCCACTCCTCTCATTCAGAATTTCTCTCTCACTCTCTCTTCCGGCGAACGATGCCTTCTCGTCGGTTCCAACGGCGCCGGAAAGACGACGATCCTGAAGATACTAGGAGGGAAGCACATGGTGGAGCCTGACATGGTTCGCGTGCTCGGCAGATCGGCTTTTCACGACACCAATTTAGTATCTTCTGGTGACCTCTGTTATCTTGGCGGCGAGTGGAGGCGAGATGTTGCTTTTGCAGGGTTTGAGGTTCCGATACAAATGGACGTTTCTGCTCAAAAAATGATATTTGGTGTGGCTGGGATTGATCCTCAAAGAAGAGCAGAATTAATCAAGGTATTAGATATTGATCTTTCCTGGAGATTGCATAAAGTGTCTGATGGTCAAAGAAGAAGAGTGCAAATTTGTATGGGTCTCCTCAAACCGTTCAAGGTTCTTCTTCTCGATGAGATAACAGTTGATCTTGATGTTCTAGCGAGAGCCGACCTTCTGAGGTTTCTAAGAAAGGAATGTGATGAGAGGGGTGCCACTGTTATCTATGCAACACATATATTTGACGGTCTCGAGGATTGGCCAACAAATATAGTTTATGTAGCCCATGGAAGGCTGCAACTAGCAATGCCTATGGACAAAGTCAAAGAAATTAGCAAATTGTCACTAATGAGAACAGTAGAAAGTTGGCTGCGAaaagagcgagacgaagacagaaagaaaaggaaagagagaaaAGCAGCTGGGCTTCCTGAATTTGGAAAGCAAGTTGAGGGAAGCCGTGTAACAGGGGATCCAGCGCGTGCTGCAGTTCGTGTAGTTAATAATGGCTGGGCAGCAGGACGATTAAATTCCACCGTTGCTGGTGAGCAAAACTTTATCCTCAGCTCAAACCGAGTATTGAGGCAATAG 1002 0.4501 MAVEGTSLDSKAATIVIKDLRFTYPGIGGHPPPGSTPLIQNFSLTLSSGERCLLVGSNGAGKTTILKILGGKHMVEPDMVRVLGRSAFHDTNLVSSGDLCYLGGEWRRDVAFAGFEVPIQMDVSAQKMIFGVAGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECDERGATVIYATHIFDGLEDWPTNIVYVAHGRLQLAMPMDKVKEISKLSLMRTVESWLRKERDEDRKKRKERKAAGLPEFGKQVEGSRVTGDPARAAVRVVNNGWAAGRLNSTVAGEQNFILSSNRVLRQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01398 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 250 IPR027417 -
Cca02g01398 333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 15 258 IPR003439 GO:0005524
Cca02g01398 333 SMART AAA_5 48 235 IPR003593 -
Cca02g01398 333 Gene3D - 10 286 IPR027417 -
Cca02g01398 333 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 12 332 - -
Cca02g01398 333 Pfam ABC transporter 40 185 IPR003439 GO:0005524
Cca02g01398 333 PANTHER ABC TRANSPORTER I FAMILY MEMBER 20 12 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01398 Cca-Chr2 32484841 32488466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01398 17 212 Calmodulin-binding Proteins AT2G36910 23.474 1.51e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01398 K12608 - gmx:100782386 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01398 02 32484841 32488466 Cca02g01398 02 32484841 32488466 ECH