Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01393 ATGACATCGGTTGGTGTGGCACCAACTTCGGGTTCAGGTTTGAGAGAAGCCAGTGGGCATGGAGCAGCAGGTGTTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGACATGGAAGCCACGGTTGTTGATGGCAATGGAACGGAGACGGGACATATCATTGTGACTACCATTGGAGGTAGAAATGGTCAGCCAAAGCAGACTATAAGCTACATGGCAGAGCGGGTAGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTTCAAACAATGCGCCTTCTTGACCACCCGAATGTTGTCTCTTTGAAGCACTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTGAATTTGGTACTTGAGTATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAATTGAACCAAAGGATGCCGCTGATATATGTGAAACTATATACATACCAGATCTTTAGGGCATTATCTTATATTCACCGTTGTATTGGAGTCTGCCATCGCGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACTCACCAGGTTAAATTATGCGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGCGAACCAAATATATCGTACATATGTTCTAGATATTATAGAGCACCTGAGCTCATATTTGGAGCAACTGAATATACTACAGCCATTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAATGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCTCATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCACCTAACTTGCGGTGCACAGCTTTAGATGCCCTGACCCATCCTTTCTTTGACGAGCTTCGTGATCCAAATACTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCTCATGAACTGAAAGGAGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTGA 1239 0.435 MTSVGVAPTSGSGLREASGHGAAGVDRLPEEMNDMKIRDDRDMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPAEILVKLVPEHARKQCPFLGL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01393 412 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01393 412 CDD STKc_GSK3 71 363 IPR039192 -
Cca02g01393 412 SMART serkin_6 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01393 412 Pfam Protein kinase domain 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01393 412 Gene3D Transferase(Phosphotransferase) domain 1 156 404 - -
Cca02g01393 412 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 410 - -
Cca02g01393 412 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
Cca02g01393 412 MobiDBLite consensus disorder prediction 1 31 - -
Cca02g01393 412 PANTHER BNAC03G34380D PROTEIN 1 410 - -
Cca02g01393 412 SUPERFAMILY Protein kinase-like (PK-like) 75 386 IPR011009 -
Cca02g01393 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Cca02g01393 412 Gene3D Phosphorylase Kinase; domain 1 60 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01393 Cca-Chr2 32436481 32440893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01393 82 388 MAP Kinase Gene Family AT2G43790 34.796 5.03e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Cca02g01393 Pkinase 4.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01393 K00924 - gmx:100780226 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01393 02 32436481 32440893 Cca02g01393 02 32436481 32440893 ECH