Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01388 ATGGTCACTGCATTTATTGCTTTGTTCAGTTTTCTATGCATAACCTGCAAAGCCATGAGGCGAGACATGCATTTGTGTGCCTCACTCATCGAAAAGTCGGAAGCGACCCAACGAGCTGAGAAAAAGAATAAGAATAAGAGCAATGCTCTTGCAAGTGCAAGCCATGATGTTCGTGCTTCTCTCGCAGGCATCACCGGTTTGATAGATATTTCTTATGACTTAGTGGACTCCGGTTCAGAATTGAAGACCAATTTGAAACAAATGAGTAGTTGTACCCATGACTTACTAGGACTGTTGAATTCTATACTTGACACAAGCAAAATAGAGTCAGGGAAAATGCCTCCTGAGGAAGAGGAATTTGATGTGTTCCTTCTCCTAGAAGATGTGGTTGACTTTTACTATCTCGTGGCTATGAAGAAACGAGTAGATATTGTATTGGACCCTTGTGATGGTTCTGTCAAGAGATATTCACGCGTGAAAGGTGACAGGGGAAAACTGAAACAAGTTTTGAGTAATTTGCTGAGCAATGCTGTTAAATTTACTAATGAGGGGCACATAGCGGTTCGTGCATGGACTAAGAAGCCAAGATTGCAGAACTCAACAGTCACTTGTAGCCAATGGAGTTTCAAGAAATCTTTATCACACTTATTTCGTGACAAAAAGGAAGCACGCGGTGACATGGAAACCCTGCATTCAATCCGAGAAGAACCACGTTTCATGGATTTTATATTTGAAGTGGATGACACGGGAAAAGGAATTCCTAAAGAGAATTACAAGTCTGTGTTCGAGGATTATGTCCAAGTTAAAGAAACTGCTTTGGGCCAAGGAGGAACTGGCTTGGGACTTGGGATTGTGCAGAGCTTGGTGCGTTTGATGCATGGAGATATTGAAATTAAAGAGAAGGATACCGGTGAAAAAGGAACATGTTTCAGGTTCAATGTGCTTCTTACATGTGAGAATGAGACAATGATCGATGGTAGCACAATGGACGATATTGAGTGTGGATCAAGAGACAAAATCCAAGCTCAGGAGCAAACAATGCATGCTACGAGTTCTAGCTTTAGAGCATGTTCCATGAGTCCTAGGTTACATATTTTCAGCTCTAGTCCTAAGCCTGAGCCTTCTCTCGTGGTTCTTTTCATCGTTGACAAGGAGCGTCAAAGAACATCACAAAGGTTCATGGAGAGGATAGGGATCAAAGTTAAAGTTGTAAATTCAGAGCAAGATTTGTTGGATACTCTTAAGAAGATCAAGCAAAAGCATCAATATTCTGATGAGTCTTCAGATTTGAGTTCTCAATCAACATCTCATAATTCTCCTGTTATATCCACAAGAGTTCCTTTGAGTTCTATGGATGTAATTGAGAACATGCCTTTAGTTTTCAAGAAGACAGATATTGGAGCTACCCCTGGCTTCATCCTTATTGTGATTGATTCTCTTGCACCACAATCTTTTGAGCTTTACCAGAATGTATCTAGCTTCAAAAGAAAGCTCTGCAACCACTGTAAGGTGGTTTGGTTGGTCAAGCCTTTTGCGCGTAATACCAACTTCAATGTCATTGATCAAAATGACATTGTTATATCCAAACCATTTCATGGTAGTCGTTTGTTTCAAACCATAAAGCTTCTTCCTGAGTTTATTGAGAGAAATTCATTGAGGACTTGTGAGGATTCAAGCATGTCAAAATACAGGTCTCCAACAAATAATGGAAGCACATTTCAAAGTGGTGAACAAATTTGGAAGGGAAGTCGACCTTATCAAGGAGAAATACAAGAATGTGGGGACTCATCAGGGTGTAAGAAACCCTTGAGTGGTAAGAAGTTTTTGGTTGCTGATGACTCTGATTTGTTACGCAAGGTAGCTTCAGCTACTTTGAATTCTCTTGGTGCAACTATTGAGGAGTGTGAGAATGGTCAACAAGCTGAGCAACTAGTGGCTGAAGCTCTGTCTCGGAATTTTCGTAATCCTCCTTATGATTACATCTTAATGGATTGTCAGATGCCAGTAATGGATGGGCTTCAAGCAACAGAGCGGATACGAGAGATGGAGAAACGGTATGGTGTCCACATTCCTATCATTGCATTGACTGCATGCACTGAAAAAATGGCGGTAGAGACTGGAATAGACTATCATATAGTCAAGCCAATTAAGGGAGAGAATTTACTTGAAGCCATCAAATGTATACATGCCAATACCTCATAA 2202 0.4064 MVTAFIALFSFLCITCKAMRRDMHLCASLIEKSEATQRAEKKNKNKSNALASASHDVRASLAGITGLIDISYDLVDSGSELKTNLKQMSSCTHDLLGLLNSILDTSKIESGKMPPEEEEFDVFLLLEDVVDFYYLVAMKKRVDIVLDPCDGSVKRYSRVKGDRGKLKQVLSNLLSNAVKFTNEGHIAVRAWTKKPRLQNSTVTCSQWSFKKSLSHLFRDKKEARGDMETLHSIREEPRFMDFIFEVDDTGKGIPKENYKSVFEDYVQVKETALGQGGTGLGLGIVQSLVRLMHGDIEIKEKDTGEKGTCFRFNVLLTCENETMIDGSTMDDIECGSRDKIQAQEQTMHATSSSFRACSMSPRLHIFSSSPKPEPSLVVLFIVDKERQRTSQRFMERIGIKVKVVNSEQDLLDTLKKIKQKHQYSDESSDLSSQSTSHNSPVISTRVPLSSMDVIENMPLVFKKTDIGATPGFILIVIDSLAPQSFELYQNVSSFKRKLCNHCKVVWLVKPFARNTNFNVIDQNDIVISKPFHGSRLFQTIKLLPEFIERNSLRTCEDSSMSKYRSPTNNGSTFQSGEQIWKGSRPYQGEIQECGDSSGCKKPLSGKKFLVADDSDLLRKVASATLNSLGATIEECENGQQAEQLVAEALSRNFRNPPYDYILMDCQMPVMDGLQATERIREMEKRYGVHIPIIALTACTEKMAVETGIDYHIVKPIKGENLLEAIKCIHANTS 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01388 733 SMART REC_2 606 725 IPR001789 GO:0000160
Cca02g01388 733 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 100 313 IPR036890 -
Cca02g01388 733 CDD HisKA 43 107 IPR003661 GO:0000155|GO:0007165
Cca02g01388 733 ProSiteProfiles Response regulatory domain profile. 607 729 IPR001789 GO:0000160
Cca02g01388 733 ProSiteProfiles Histidine kinase domain profile. 52 318 IPR005467 -
Cca02g01388 733 Gene3D - 32 111 - -
Cca02g01388 733 CDD REC_hyHK_CKI1_RcsC-like 608 725 - -
Cca02g01388 733 PANTHER HISTIDINE KINASE CKI1 1 727 - -
Cca02g01388 733 SMART HisKA_10 45 111 IPR003661 GO:0000155|GO:0007165
Cca02g01388 733 PRINTS Bacterial sensor protein C-terminal signature 242 256 IPR004358 GO:0016310|GO:0016772
Cca02g01388 733 PRINTS Bacterial sensor protein C-terminal signature 260 270 IPR004358 GO:0016310|GO:0016772
Cca02g01388 733 PRINTS Bacterial sensor protein C-terminal signature 276 294 IPR004358 GO:0016310|GO:0016772
Cca02g01388 733 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 727 - -
Cca02g01388 733 Pfam Response regulator receiver domain 609 726 IPR001789 GO:0000160
Cca02g01388 733 Gene3D - 112 323 IPR036890 -
Cca02g01388 733 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 161 316 IPR003594 -
Cca02g01388 733 Gene3D - 590 731 - -
Cca02g01388 733 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 33 113 IPR036097 GO:0000155|GO:0007165
Cca02g01388 733 SMART HKATPase_4 161 318 IPR003594 -
Cca02g01388 733 SUPERFAMILY CheY-like 603 726 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01388 Cca-Chr2 32386418 32389435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01388 11 697 Histidine Kinase Gene Family AT2G47430 43.708 5.64e-171 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca02g01388 HATPase_c 1.8e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01388 - - ccaj:109811957 1413.67