Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01386 ATGGATACCTTCCTATTCACTTCCGAGTCGGTAAACGAGGGTCATCCCGACAAGCTATGTGATCAGATATCTGATGCAGTTCTTGATGCCTGCTTGGAGCAAGACCCTGAAAGCAAGGTTGCATGTGAGACATGCACCAAGACTAACTTGGTCATGGTATTTGGAGAGATCACTACAAAAGCCAAGGTAGACTACGAGAAGATTGTGCGCGACACGTGTCGTTCCATAGGATTTGTGTCTGATGATGTTGGCCTTGATGCTGACAACTGCAAGGTTTCGGTCTACCTTGAGCAGCAAAGCCCTGACATAGCTCAGGGAGTCCATGGCCACCTCACCAAGCGACCTGAAAACATAGGAGCTGGTGATCAGGGTCACATGTTTGGCTACGCCACAGATGAAACACCTGAGCTCATGCCTCTCAGCCATGTCCTTGCAACCAAGCTTGGTGCCAAGCTCACTGAAGTCCGCAAGAATGAGACCTGTCCTTGGCTGAGACCTGATGGAAAAACTCAAATCACTGTTGAGTATGTTAATGATCATGGTGCCATGGTCCCAGTGCGTGTCCACACTGTTCTCATATCTACTCAACATAATGAAACAGTTACCAAcgatgagattgctgtagacttgaaagagcatgttattaagcctgttattcctgacaagtctcacagggcgtaa 681 0.4302 MDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADNCKVSVYLEQQSPDIAQGVHGHLTKRPENIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNETCPWLRPDGKTQITVEYVNDHGAMVPVRVHTVLISTQHNETVTNDEIAVDLKEHVIKPVIPDKSHRA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01386 226 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Cca02g01386 226 Gene3D - 117 139 - -
Cca02g01386 226 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Cca02g01386 226 Gene3D - 11 116 - -
Cca02g01386 226 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Cca02g01386 226 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 222 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca02g01386 226 SUPERFAMILY S-adenosylmethionine synthetase 115 222 IPR022636 GO:0004478|GO:0006556
Cca02g01386 226 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 1 222 - -
Cca02g01386 226 Pfam S-adenosylmethionine synthetase, central domain 118 222 IPR022629 GO:0004478|GO:0006556
Cca02g01386 226 Gene3D - 4 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01386 Cca-Chr2 32356542 32357299 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01386 K00789 - mnt:21386808 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02731 03 48652756 48665651 Cca02g01386 02 32356542 32357299 ECH
Cca11g02645 11 53719136 53721896 Cca02g01386 02 32356542 32357299 ECH
Cca08g01281 08 38458032 38460347 Cca02g01386 02 32356542 32357299 ECH
Cca02g01386 02 32356542 32357299 Cca02g01386 02 32356542 32357299 ECH