Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01385 ATGGGTGCTGATCTTGAAGCTAAATTGTCCAAAACAACTTCTGTTTTTGGTCTTATGGTTTGGGAAATAATTGGAATTGGGGTTGGATTGTTTATTATTGTCATCCTTTGTGTGCTCTCATTTTGCCTTACTTCAAGGAAGAAACCTGTAAAAGCCAGGGACGAGATTCCTGTTAGTCATACTCATATACCTACGGTCTCAAAGGAAATCAAGGAAGTGCGGGTTGAGCGAATGCCGGCAAATGAATTTGTTCCTCGGGAAGGAATACTTCTTACAATTCATGATAAATCCAGTGACAAAGAATCAGACAAAGTTATGCTTCATTTAGGCGTAGGGATGATGAAGCATGGGGATAGTGGCAGTTATTCGGGTTCGTTTCATGGCTTGGAGAAAGATGGAGGAGGGTCACAATCAGGGGAAGAAATTAGCTCTGGCACAGTTGGAACGTACAATCCCTCTTCTTCATACCCTTTAACAGCTCCTTCACCTCTCTCTGGCCTTCCAGAATTCTCTCATTTGGGTTGGGGTCACTGGTTTACACTGAGAGATCTTGAACATGCTACAAACCGTTTTTCAAAAGAAAATGTAATTGGTGAGGGTGGGTATGGAGTTGTTTACCGGGGACAGTTGATCAATGGGACTCCAGTCGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCTGAAAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTGCGGCATAAAAATCTGGTTCGTCTGTTGGGGTACTGCATGGAGTGGACTCACAGGATGTTAGTCTATGAGTATGTCAATAATGGGAACTTAGAGCAATGGCTTCATGGAGCTATGAGACATCATGGATATCTTACCTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCTAAAGCGCTTGCATATTTGCATGAAGCGATTGAGCCAAAAGTGGTACACCGAGATATCAAGTCAAGCAACATATTAATTGATGATGAATTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTGGGTGCTGGGAAGAGTTATGTTGCAACGCGAGTTATGGGAACCTTTGGATATGTGGCTCCTGAATATGCAAATACTGGTCTTCTAAATGAAAAAAGTGATGTTTATAGCTTCGGTGTTGTGTTATTGGAAGCAATTACTGGAAGGGATCCAGTTGACCATGGTCGTCCATCACAGGAAGTTAATATGGTTGATTGGCTGAAGATGATGGTTGGAAACAGGCGATCAGAAGAAGTAGTGGACCCAAACATTGAGGTGAGGCCATCTACCAGAGCTTTGAAACGGGCCCTCTTAACTGCTTTGAGATGTGTAGATCCAGATTCAGAGAAAAGACCCAAGATGGGTCAAGTTGTGCGCATGCTTGAGTCAGAGGAGTACCCTGTACCAAGAGAGGACCGTAGGCATCGAAGAAATCGTGAGGTTAACTCAGAAATTGAATCCCAGAAGGATTGTTCTGACACGGATGGCAGTGACATTCAGGGTTCTAGATCAGAAAGTGGAAGGTAA 1530 0.4314 MGADLEAKLSKTTSVFGLMVWEIIGIGVGLFIIVILCVLSFCLTSRKKPVKARDEIPVSHTHIPTVSKEIKEVRVERMPANEFVPREGILLTIHDKSSDKESDKVMLHLGVGMMKHGDSGSYSGSFHGLEKDGGGSQSGEEISSGTVGTYNPSSSYPLTAPSPLSGLPEFSHLGWGHWFTLRDLEHATNRFSKENVIGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCMEWTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGAGKSYVATRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDHGRPSQEVNMVDWLKMMVGNRRSEEVVDPNIEVRPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPVPREDRRHRRNREVNSEIESQKDCSDTDGSDIQGSRSESGR 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01385 509 Pfam Protein kinase domain 192 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01385 509 Gene3D Transferase(Phosphotransferase) domain 1 267 479 - -
Cca02g01385 509 SMART serkin_6 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01385 509 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 505 - -
Cca02g01385 509 MobiDBLite consensus disorder prediction 495 509 - -
Cca02g01385 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Cca02g01385 509 CDD STKc_IRAK 197 463 - -
Cca02g01385 509 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
Cca02g01385 509 MobiDBLite consensus disorder prediction 462 509 - -
Cca02g01385 509 MobiDBLite consensus disorder prediction 462 494 - -
Cca02g01385 509 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Cca02g01385 509 MobiDBLite consensus disorder prediction 124 148 - -
Cca02g01385 509 PANTHER OS01G0323000 PROTEIN 3 505 - -
Cca02g01385 509 ProSiteProfiles Protein kinase domain profile. 191 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01385 509 SUPERFAMILY Protein kinase-like (PK-like) 175 471 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01385 Cca-Chr2 32350055 32355621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01385 134 465 Trihelix Transcription Factor Family AT1G70460 47.041 1.12e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca02g01385 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01385 - - gmx:100778269 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01385 02 32350055 32355621 Cca02g01385 02 32350055 32355621 ECH
Cca02g01385 02 32350055 32355621 Cca03g02677 03 48061650 48067120 PCT