Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01373 ATGGCTAGGAAGAAGATGAAGCTTGCTTATATTTCTGATGACACTGCAAGGAAAGTCACATATAAGAAAAGAAAGAAGGGTGTGATCAAGAAGGTGAGTGAACTGACTATTCTTTGTGGCATCCCTGCATGTGCCATCATCTCTAGTCCTTTTGATTCCCAGCCAGAGGTTTGGCCAAGTCCTGAGGGAGCCAAAGAGGTGATTCAGAGGTATTTGAATGCTTCTGTGCTGGATCAAAGCAAGAATGTGAACCAAGAAAGCTTCATCATGCAGAGGATTGTGAAAACGCGTGACCAATTGAAGAAGCAGCGTCATGACAATGATGAGAAGGAGATGAATTTGTCCTTGTTCAAGTACATGCAAGGTGAACCCCTGCCAAATACTGCTGAAGAATTGAAACAACTTGACAAACTTATTGAGAAGAATTTGAAGGAGATTGAGAATAAGTTGGCTGCACTCAATTGTGAGGCTAGTATTAATTAG 483 0.4161 MARKKMKLAYISDDTARKVTYKKRKKGVIKKVSELTILCGIPACAIISSPFDSQPEVWPSPEGAKEVIQRYLNASVLDQSKNVNQESFIMQRIVKTRDQLKKQRHDNDEKEMNLSLFKYMQGEPLPNTAEELKQLDKLIEKNLKEIENKLAALNCEASIN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01373 160 Coils Coil 93 113 - -
Cca02g01373 160 Coils Coil 129 156 - -
Cca02g01373 160 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Cca02g01373 160 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca02g01373 160 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca02g01373 160 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cca02g01373 160 PANTHER MADS BOX PROTEIN 2 153 - -
Cca02g01373 160 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca02g01373 160 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Cca02g01373 160 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 153 - -
Cca02g01373 160 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca02g01373 160 Gene3D - 13 122 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01373 Cca-Chr2 32224752 32225234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01373 3 158 Type I MADS-box Gene Family AT1G65300 41.615 1.08e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca02g01373 SRF-TF 9.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01373 - - gmx:100792290 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01373 02 32224752 32225234 Cca02g01373 02 32224752 32225234 ECH