Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01372 ATGACTAGGAAGAAAGTGAAACTAGCTTTTATCTCGGACAACACAGCAAGAAAAACCACGTACAAGAAAAGGAAGAAAGGTATCATTAAGAAGGTGAGTGAACTCACCATCCTATGTGGGATTCCAGCATGTGCTATAATTTCGAGTTCTTTCGAATCCAAGCCAGAGATTTGGCCAGATCCAGAGAGGGCGAAGCAAATGATTGAAAAGTATTTGAATGAAGCTGTGTTAGATCAAAACAAGAATATCAACCAAGAGAGTTTCATCATGCAGAGGATTGACAAAGCACGTGATCGACTAAAGAAGCTGCGTCAAGAAAATTGTGAGAAGGAAACGACCTTGTCCTTGTTCCAGTACATGCAAGGTAAAGACCTACCAGATAATGTTGAAGAACTGAAAAAACTCGATAAGCTCATTGAGAAGAATAAGAAGGGGATTGAAATTAAATAA 450 0.3889 MTRKKVKLAFISDNTARKTTYKKRKKGIIKKVSELTILCGIPACAIISSSFESKPEIWPDPERAKQMIEKYLNEAVLDQNKNINQESFIMQRIDKARDRLKKLRQENCEKETTLSLFQYMQGKDLPDNVEELKKLDKLIEKNKKGIEIK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01372 149 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Cca02g01372 149 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca02g01372 149 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca02g01372 149 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Cca02g01372 149 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 147 - -
Cca02g01372 149 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Cca02g01372 149 Coils Coil 86 106 - -
Cca02g01372 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Cca02g01372 149 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca02g01372 149 PANTHER MADS BOX PROTEIN 2 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01372 Cca-Chr2 32211366 32211815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01372 1 146 MADS-box Gene Family AT5G26630 45.638 3.72e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca02g01372 SRF-TF 3.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01372 - - gmx:100792290 210.305