Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01371 ATGAGAAGGAAGAGAGTGAATAGGGCACAAGAAATGAAGTCATCCAGATGGCATGCCGTTGCTTCGTGGACTTGGGATGCTCAGGATGAAACATGTGGGATTTGTAGGATGGCCTTTGATGGGTGTTGTCCTGACTGTAAACTTCCTGGGGATGACTGCCCACTGATTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGTCCCATGTGCCGTCGGGAGTGGCAGTTTAAAGGATAA 282 0.4752 MRRKRVNRAQEMKSSRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01371 93 SUPERFAMILY RING/U-box 13 92 - -
Cca02g01371 93 CDD RING-H2_APC11 29 91 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Cca02g01371 93 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
Cca02g01371 93 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 13 92 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Cca02g01371 93 PANTHER RING BOX 11 92 - -
Cca02g01371 93 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 11 92 - -
Cca02g01371 93 ProSiteProfiles Zinc finger RING-type profile. 43 86 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01371 Cca-Chr2 32202552 32207852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01371 43 86 C3H Transcription Factor Family AT1G72220 41.304 2.89e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01371 K03358 - sind:105169409 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01371 02 32202552 32207852 Cca02g01371 02 32202552 32207852 ECH