Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01370 ATGCCTTTGTATGAGTTATACCGGCTGGCTAGGGAGAAGCTTGGAAAAGAGACTAACAGCACACGTGCACCTGATCAATGTTCCTCGCCTGAGAATGATTTCTTTGAGCTCATTTGGGAGAATGGTCAGATTTCGAGCCAGGGTCAGTCCAGTAGAGTTAGGAGGAGTCCATCTTGCAAGAGTTTGCCATCTCACTGTTTACCATCTCATAGTCCCAAAAGTAGGGATAGAGATGTTGGATATGGTGCCAACACAAGGATGGGAAAATTTGGGGATTTAGACTCTGGATTGGATGGAATTCAAATGTCAGTGCCGTCCCGCGAAGTGGATTTCTGTCAAGATGAAGATGTGTTACCTTGGTTAGATTATACAACGATGGATGGTTCCTTGCAACATGAATATGGTTCTGATTTCCTCCCTGCCTCAAATAGTTTTACTCAATTGGATAAAAAAAGTAATGGTAATATGGTATTCAGGGATTCTCATAAAACTTCTGAAGAACAAGGGAATGTTTTCAAGGGTTCTTCAGATGAACATGTTGAGACAGCTAGACCTAAATCTAGCACCAGTCAGTTATACTCCCCATCATTGCATCAGGGTCAAACATCATTTGTACCTTCTAGATCCAGAGCATTGGATATAACTGAAAATAATAATGCGAGTAATGCAAACCAGGATGCGTCTTATGGCGAAATTACTCATATTCTATCTTCGTCGAGTGATTTTTCTAGCTTAAAGGTGCAGAAGCAAGATCCACCTATGCCTAGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATTGTAAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGTCTTCAGCAAGATCAGACTGTATGGAAATTAAGAATAAAGGTGCTGTTCCAACTAGCAGCAATCCTCCTGAATCAATTCTGGTTGATTCAAGTGGTGAATGTTCAAAGGAACTGACCATGGACATCCAGCAGGTTGTGGAGAAATCCAAGGCCGATTTGAACTCTTTGCAGCCAAAATCTGTTGAACAGGATGCTGTGCCTTCTAAGCAGTTGGAACCTGTTTGTAAAGAGAGTGCCACTAAGATTGATCAAACTCCCAATCAAGTTCTTGGTGACAGTGGTGCTAAAGGACAGACGGCTGCTGAAAAAAGTATGGAGCCAACAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGATGCAGACAGAGGTTCAGATGAGCCAAATCAAAATTTGAAGCGAAAAAGAAAAGATACGGAGGACTCTGAGTGTCATAGTGAAGATGTTGAAGAAGAATCAATGGGTGTTAAAAAGGCCGTCGGTGGGCGAGGAGGTACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGACGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCATATGCATGCACCACATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGTTTTGGTATGGGTTATGGAATGGGCATGCCTGACATGAATGGGGGATCTTCAAGATTCCCAATGATTCAGGTGCCACAAATGCAAGGAACTCATATCCCTGTTGCACATATGTCTGGACCCACTTCTTTACAAGGGATGGCTAGATCAAATCCTCCAGGGTTTGGGCTTCCTGGACAAGGACATCCCATGCCAATGCTGCGAGCTCCTGTATTTCCTTTTTCGGGAGGGCCTCACGTGAACAAATCAGCTCTGGGACTACATGCCTGTGGATCATCAGGAGTTGTTGAAACTGTGGATTCAGCTTCTGCTTCTTGCTTAAAAGATCAAATGCCAAATGTTGACCCACATGTTAAGCAAATCACTGGTGGATGTGATTCAACAAGTCAGATGCCTACCCAATGTGAAGCAGCTGCCGGATTTGAGCAATCTGCTTTGGCACATAGTAGTGGTGGTCATGCCTCCAACCCTAATGACAAAGTAGCGGTTAATCCTGGTCCTGGCAAAGAAGATAACCTTGTGATCGGTTATGATTGA 2202 0.4369 MPLYELYRLAREKLGKETNSTRAPDQCSSPENDFFELIWENGQISSQGQSSRVRRSPSCKSLPSHCLPSHSPKSRDRDVGYGANTRMGKFGDLDSGLDGIQMSVPSREVDFCQDEDVLPWLDYTTMDGSLQHEYGSDFLPASNSFTQLDKKSNGNMVFRDSHKTSEEQGNVFKGSSDEHVETARPKSSTSQLYSPSLHQGQTSFVPSRSRALDITENNNASNANQDASYGEITHILSSSSDFSSLKVQKQDPPMPSNGSSSTIMNFSHFARPAAIVRANLQNIGLKSGLSSARSDCMEIKNKGAVPTSSNPPESILVDSSGECSKELTMDIQQVVEKSKADLNSLQPKSVEQDAVPSKQLEPVCKESATKIDQTPNQVLGDSGAKGQTAAEKSMEPTVASSSVCSGNGADADRGSDEPNQNLKRKRKDTEDSECHSEDVEEESMGVKKAVGGRGGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPMGVGMHMGFGMGYGMGMPDMNGGSSRFPMIQVPQMQGTHIPVAHMSGPTSLQGMARSNPPGFGLPGQGHPMPMLRAPVFPFSGGPHVNKSALGLHACGSSGVVETVDSASASCLKDQMPNVDPHVKQITGGCDSTSQMPTQCEAAAGFEQSALAHSSGGHASNPNDKVAVNPGPGKEDNLVIGYD 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01370 733 MobiDBLite consensus disorder prediction 367 470 - -
Cca02g01370 733 MobiDBLite consensus disorder prediction 45 79 - -
Cca02g01370 733 MobiDBLite consensus disorder prediction 701 733 - -
Cca02g01370 733 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 462 511 IPR011598 GO:0046983
Cca02g01370 733 PANTHER TRANSCRIPTION FACTOR PIF3 1 687 - -
Cca02g01370 733 CDD bHLH_AtPIF_like 462 524 - -
Cca02g01370 733 MobiDBLite consensus disorder prediction 185 205 - -
Cca02g01370 733 SMART finulus 468 517 IPR011598 GO:0046983
Cca02g01370 733 MobiDBLite consensus disorder prediction 45 68 - -
Cca02g01370 733 MobiDBLite consensus disorder prediction 416 447 - -
Cca02g01370 733 MobiDBLite consensus disorder prediction 155 184 - -
Cca02g01370 733 MobiDBLite consensus disorder prediction 369 383 - -
Cca02g01370 733 Pfam Helix-loop-helix DNA-binding domain 466 512 IPR011598 GO:0046983
Cca02g01370 733 Gene3D - 457 520 IPR036638 GO:0046983
Cca02g01370 733 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 459 522 IPR036638 GO:0046983
Cca02g01370 733 MobiDBLite consensus disorder prediction 393 408 - -
Cca02g01370 733 MobiDBLite consensus disorder prediction 151 205 - -
Cca02g01370 733 PANTHER TRANSCRIPTION FACTOR PIF3 1 687 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01370 Cca-Chr2 32177802 32183365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01370 1 591 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.186 1.13e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g01370 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01370 K12126 - gmx:100794974 1185.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01370 02 32177802 32183365 Cca02g01370 02 32177802 32183365 ECH