Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01368 ATGGGGAGACACTCTTGCTGCTACAAACAGAAGTTAAGGAAAGGCCTATGGTCTCCAGAGGAAGATGAGAAGCTTCTGAATTACATCACCAAACATGGTCATGGATGTTGGAGTTCGGTCCCCAAACTAGCTGGTTTGCAAAGGTGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAACATGATTATTGAACTCCATGCAGTCCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAGAATCTATGGAACTCGTGCCTGAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAACCACTTTCTGAGGTTGAGAACGACAAGGACATGCCACCCTCAACCGACAAAAGCAATCAGAAAGCCTCAGTGGGATCCAATGAAGTGAGTTTGGTTGATCAGCTACCAAAATCAATGCCTTCAGAGAGATACCACCCTCTTGAAGTTTCCACTAGTTGTTCCACACAGGAACTATTCCTAGATAGGTTTGGTACCACCAGCCATGATAACACTTGCCGACCCTCTGATGTGCCTTCTGTTAGTCTCCAATCTAACACCAACCCTTCCATATCCTCTGATGGGGTTCAAAACTGGGAAGCTGGCAGCTTCAGTAACGGCAACAACACCAACAAAAACATTCAGTTACAAAGCAGCACAAACACAAACTTCCTTGACAACACGTGGGGGGTGGCAGAGTCTATGAAGGTTAACAAAGACTCTCAGGTGCCCCTACAAGCAGAACAAGAAGATCTAAAATGGTCTGAGTATCTCAACACCCCATTCATTCTGGGAAACACAGCACAGAATCAAACCTCTCAATCTATCTACAGTGAGCAAAGATCTGCAGAGATTTTCAGTGACGTTTGGACAAACCCTGTAGCCTGTGTACGTAATATGTGGAAACTTCAACTCAACGAAAGAGACAAAGATGTTGCCGACTTAATTTCCATTATGAACCAGATGGAGATTGTTTTCACTTTTTGA 1065 0.4498 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDMPPSTDKSNQKASVGSNEVSLVDQLPKSMPSERYHPLEVSTSCSTQELFLDRFGTTSHDNTCRPSDVPSVSLQSNTNPSISSDGVQNWEAGSFSNGNNTNKNIQLQSSTNTNFLDNTWGVAESMKVNKDSQVPLQAEQEDLKWSEYLNTPFILGNTAQNQTSQSIYSEQRSAEIFSDVWTNPVACVRNMWKLQLNERDKDVADLISIMNQMEIVFTF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01368 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Cca02g01368 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca02g01368 354 MobiDBLite consensus disorder prediction 197 240 - -
Cca02g01368 354 MobiDBLite consensus disorder prediction 119 142 - -
Cca02g01368 354 Gene3D - 68 148 - -
Cca02g01368 354 CDD SANT 17 61 IPR001005 -
Cca02g01368 354 PANTHER HOMEODOMAIN-RELATED 199 312 - -
Cca02g01368 354 PANTHER HOMEODOMAIN-RELATED 1 203 - -
Cca02g01368 354 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca02g01368 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca02g01368 354 Gene3D - 11 67 - -
Cca02g01368 354 MobiDBLite consensus disorder prediction 119 158 - -
Cca02g01368 354 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Cca02g01368 354 PANTHER MYB DOMAIN PROTEIN 55 199 312 - -
Cca02g01368 354 PANTHER MYB DOMAIN PROTEIN 55 1 203 - -
Cca02g01368 354 CDD SANT 69 109 IPR001005 -
Cca02g01368 354 SMART sant 66 114 IPR001005 -
Cca02g01368 354 SMART sant 13 63 IPR001005 -
Cca02g01368 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Cca02g01368 354 MobiDBLite consensus disorder prediction 143 158 - -
Cca02g01368 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01368 Cca-Chr2 32141681 32143989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01368 1 352 MYB Transcription Factor Family AT1G09540 47.619 2.03e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01368 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01368 K09422 - gmx:778072 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02710 03 48419135 48420540 Cca02g01368 02 32141681 32143989 ECH
Cca02g01368 02 32141681 32143989 Cca03g02710 03 48419135 48420540 ECH
Cca02g01368 02 32141681 32143989 Cca02g01368 02 32141681 32143989 ECH
Cca03g02689 03 48174397 48176663 Cca02g01368 02 32141681 32143989 ECH
Cca03g02689 03 48174397 48176663 Cca02g01368 02 32141681 32143989 PCT