Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01365 ATGGGTATTAAGGGTTTAACGAAGCTTTTAGCGGACAATGCCCCAAAGTGCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATCGCCATTGACGCTAGCATGAGCATTTACCAGTTCCTTATTGTCGTGGGAAGAAGTGGAACTGAAATGCTCACTAATGAAGCCGGTGAAGTTACCAGTCATTTGCAAGGAATGTTTTCGCGGACAATCAGACTTCTAGAAGCTGGGATAAAGCCAGTTTATGTTTTTGATGGGAAGCCACCAGATATGAAGAAACAAGAGCTGGCAAAACGTTACTCCAAGAGGGCTGAGGCTACTGAGGATTTGTCAGAAGCCTTAGAGACTGCCACTAAGGAAGAGATTGAAAAAATCAGTAAACGGACAGTGAAGGTCACAAAGCAGCATAATGATGATTGCAAAGGACTTTTAAGACTCATGGGTGTGCCTGTCGTTGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCTCTTTGCAAAGCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGAGCTCCTAAATTTCTTCGTCACTTAATGGATCCTAGCTCAAAAAAAATTCCAGTGATGGAGTTCGATGTTGCAAAGCTTTTGGAGGAGCTAAATCTGACCATGGACCAATTTATTGATTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGGGATTGGGGGACAAACAGCTTTGAAACTCATACGTCAACATGGCTCTATTGAGAATATACTGGAGAACATAAACAGAGAGAGGTACCAGATACCAGATAGTTGGCCATATCAAGAGGCTCGTCAGCTTTTTAAAGAACCAGTGGTCTTAACTGGTGAAGAGGAACTTAATATTAAGTGGTCTGCTCCTGATGAAGAAGGGTTAATAGCATTTCTGGTAAATGAGAATGGCTTCAACAGTGATAGAGTGACAAAGGGAATAGAAAAAATTAAAGCATCAAAGAGCAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCGAACAGAAAATCCTTCTGTACCTATAAAACGCAAGGAAACGCCAGAGAATAAGGCCAAAGAGACCAACAAAAAGGCCAAGGCTGGTGGTGTTAAGAAGAAGAAATAG 1149 0.423 MGIKGLTKLLADNAPKCMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRAEATEDLSEALETATKEEIEKISKRTVKVTKQHNDDCKGLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKLLEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDSWPYQEARQLFKEPVVLTGEEELNIKWSAPDEEGLIAFLVNENGFNSDRVTKGIEKIKASKSKSSQGRLESFFKRTENPSVPIKRKETPENKAKETNKKAKAGGVKKKK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01365 382 Coils Coil 99 125 - -
Cca02g01365 382 CDD PIN_FEN1 4 328 - -
Cca02g01365 382 Gene3D - 2 218 - -
Cca02g01365 382 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Cca02g01365 382 SMART 53exo3 29 341 IPR002421 GO:0003677
Cca02g01365 382 MobiDBLite consensus disorder prediction 332 382 - -
Cca02g01365 382 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 373 IPR006084 -
Cca02g01365 382 Gene3D - 219 286 - -
Cca02g01365 382 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 354 IPR036279 -
Cca02g01365 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cca02g01365 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cca02g01365 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cca02g01365 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Cca02g01365 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Cca02g01365 382 CDD H3TH_FEN1-Euk 222 290 - -
Cca02g01365 382 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Cca02g01365 382 PANTHER FLAP ENDONUCLEASE 1 1 373 - -
Cca02g01365 382 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Cca02g01365 382 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Cca02g01365 382 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Cca02g01365 382 SMART xpgineu 147 219 IPR006086 GO:0004518
Cca02g01365 382 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Cca02g01365 382 MobiDBLite consensus disorder prediction 352 373 - -
Cca02g01365 382 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Cca02g01365 382 SMART xpgn3 1 108 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01365 Cca-Chr2 32093393 32100127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01365 1 361 Core DNA Replication Machinery Family AT5G26680 85.042 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01365 K04799 - gmx:100792878 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01365 02 32093393 32100127 Cca02g01365 02 32093393 32100127 ECH