Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01347 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTTAGAAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAGCTTCTGAGGCATATTACAAAGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTGAGGCCTGATTTAAAGAGAGGAACATTCTCACAAGAAGAAGAAAACCTTATCATTGAACTTCATGCAGTATTAGGGAACAGGTGGTCTCAAATTGCAGCACAGTTGCCAGGTAGGACTGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAGGGCATAGACCCTGTCACTCATAAACCACTTTCTGAGGTTGAGAATGGAGAGGACAAAGAGAAAGCACAAGAAGTGTCAAATGAATTGAACCTCCTGAAATCAGAGAGCTCCAAGTCAGATTCAGCTTCCTATGAGCATAGAACATCAATTTCTCCAAAAGCCTATGCACCTGAAATGGatggttcttgtagctccaagattgaaagcaattacgtaaccaatttcagcaaagacttgttcCTAGACAGGTTTATGAGTAGCCGCCAAGAGAGCTACACTAACACCACTAGTTGCCAGCCCTCAGATTTGATGGGGAATTTTCCCATTCAGATGAGTTATGCAACCACTGAGTGTCTCCCAAATGATTCAAATTCTAGCCATTGGTTCAGCCAAAATGGAAGGCCTTTTGATATGAACTCTGAAATCCCTTTCAATGCTGCTGCCACTTCTATTCCTACACCTACAACCAACTTGTTTCTCCCTAATAATTCTTTTTGCTACAAGCCCTCACTTGCTGTTCCCTCTGACAATGTTTCTACACCCTATGGATCCCATTACTGGGAGGCCACTGCCTCAAACAATAGCAATAGCAGCATTAGGAGTGATAGCAGCACAGAGATGAGAACAAGCAGCCCCTTAAACTTACCTTATTCTTGGGGTTTGGCAGATTGTAGCACCTCTACTAAAGAGGCTCAAATTCATATGATGGAGAATCATGCAGAAGAAGCTAAGTGGGATGAGTATCTTCATAATCCAATCTCTATGCTGGCTTCTGTACAAAACCAAGCTCCTGAGTCCTTATGCAATGAGATAAAAACATCCATGCATTTGTATCTTTTCCAAGGACATGCAGAAGCTCAGGGCAGCGTTTGGACACATGTAAAAGGAATGGAGATGAACAAAGATTTTAGAAGGATTGCTATTCTTAGTACAGGGACAGAGTTACTTTACCTGCAAACAATTCCAGAATCCAAGGTATGA 1338 0.4066 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENGEDKEKAQEVSNELNLLKSESSKSDSASYEHRTSISPKAYAPEMDGSCSSKIESNYVTNFSKDLFLDRFMSSRQESYTNTTSCQPSDLMGNFPIQMSYATTECLPNDSNSSHWFSQNGRPFDMNSEIPFNAAATSIPTPTTNLFLPNNSFCYKPSLAVPSDNVSTPYGSHYWEATASNNSNSSIRSDSSTEMRTSSPLNLPYSWGLADCSTSTKEAQIHMMENHAEEAKWDEYLHNPISMLASVQNQAPESLCNEIKTSMHLYLFQGHAEAQGSVWTHVKGMEMNKDFRRIAILSTGTELLYLQTIPESKV 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01347 445 Gene3D - 69 147 - -
Cca02g01347 445 Coils Coil 134 154 - -
Cca02g01347 445 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca02g01347 445 CDD SANT 17 61 IPR001005 -
Cca02g01347 445 SMART sant 13 63 IPR001005 -
Cca02g01347 445 SMART sant 66 114 IPR001005 -
Cca02g01347 445 PANTHER HOMEODOMAIN-RELATED 1 403 - -
Cca02g01347 445 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca02g01347 445 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca02g01347 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca02g01347 445 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca02g01347 445 MobiDBLite consensus disorder prediction 146 167 - -
Cca02g01347 445 Gene3D - 11 67 - -
Cca02g01347 445 PANTHER MYB DOMAIN PROTEIN 55 1 403 - -
Cca02g01347 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca02g01347 445 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Cca02g01347 445 MobiDBLite consensus disorder prediction 123 177 - -
Cca02g01347 445 MobiDBLite consensus disorder prediction 123 145 - -
Cca02g01347 445 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01347 Cca-Chr2 31964182 31966095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01347 1 155 MYB Transcription Factor Family AT4G01680 84.615 2.05e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01347 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01347 K09422 - gmx:100782199 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02710 03 48419135 48420540 Cca02g01347 02 31964182 31966095 PCT