Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01344 ATGCCTGATTCCACCAGACAAGGAATGTCTAGAAGCTCCTCCTATCTAGATTCCATTTATGGCAAAGGTTCCCCTGAGCTGGTATTGGAAAATGGCCAACTTCACATGCAGCAAGGAGGTTCATCATCAAGTGTCACACGCGTGACTCCCTCGTGCGATGAAGGTTCCTTCAATGCAATAAGTGAAAGGTTAAGCTCACTATACTCTCTCATGGACTTCCAACTTCAAAGAGACTCACAGAAACAAGACGTGGGAAAGGTCAATTCCCCCACCAACGTTTTAAGACCTTCATTGTTTCTTAAATCCACTTTCAAGGGAAACAGCAACACATTGGTTACAAACAATTCAGGTTTACAACGAGTAGAAGAAGAGATTGAAGCTATTAAGTTTGCAAAGGCTTCTAGCAGCAAAGATCTTGATCATTGCTCTGTGATTGACTCATATAAAGGGCCACAGGGTGTCATAGGACTTGAGAGGCAAAACCCTTTAACTTCTGATGCATCAAATCATGTTCCAAGAAGTGAGGAAACACCTCCTGATGAGCAATCCGAGGCTGTTGCTCATAATAGTGCAATTGGTGTTCACAGATCTCATGGTCAGTATCATCATAACCAAACCTCAAGGAACCATGATGACATCGATGACTCGACGTATTTAAGTGATAATGATGAAGAACCAGAAGATGTACTGAAGGAAAAGCCTGCTCGGGAAGGCACCGGAGTCAAGAGAAGTAGGAATGCACAAGTTCATAATTTATGTGAAAGGAATCGAAGAGATAAGATCAACAAGAGGATGCGTATATTGAAGGAGCTCATACCCAATTGCAATAAAACGGACAAAGCTTCAATGCTTGATGATGCCATCGAATATCTAAAGACCCTAAAGCTTCAGTTACAGTGTTATGATGCAGATTATGTCAATGGGTGCTGGATTTTGTATGCCTTTTATGATGTTGCCTAA 960 0.4177 MPDSTRQGMSRSSSYLDSIYGKGSPELVLENGQLHMQQGGSSSSVTRVTPSCDEGSFNAISERLSSLYSLMDFQLQRDSQKQDVGKVNSPTNVLRPSLFLKSTFKGNSNTLVTNNSGLQRVEEEIEAIKFAKASSSKDLDHCSVIDSYKGPQGVIGLERQNPLTSDASNHVPRSEETPPDEQSEAVAHNSAIGVHRSHGQYHHNQTSRNHDDIDDSTYLSDNDEEPEDVLKEKPAREGTGVKRSRNAQVHNLCERNRRDKINKRMRILKELIPNCNKTDKASMLDDAIEYLKTLKLQLQCYDADYVNGCWILYAFYDVA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01344 319 CDD bHLH_AtPIF_like 245 299 - -
Cca02g01344 319 Gene3D - 241 303 IPR036638 GO:0046983
Cca02g01344 319 Pfam Helix-loop-helix DNA-binding domain 248 294 IPR011598 GO:0046983
Cca02g01344 319 SMART finulus 251 300 IPR011598 GO:0046983
Cca02g01344 319 PANTHER TRANSCRIPTION FACTOR PIF3 1 208 IPR044273 GO:0003700|GO:0006355
Cca02g01344 319 MobiDBLite consensus disorder prediction 200 244 - -
Cca02g01344 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Cca02g01344 319 MobiDBLite consensus disorder prediction 153 186 - -
Cca02g01344 319 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 206 300 - -
Cca02g01344 319 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 208 - -
Cca02g01344 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 305 IPR036638 GO:0046983
Cca02g01344 319 MobiDBLite consensus disorder prediction 158 172 - -
Cca02g01344 319 MobiDBLite consensus disorder prediction 224 240 - -
Cca02g01344 319 PANTHER TRANSCRIPTION FACTOR PIF3 206 300 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01344 Cca-Chr2 31863761 31866351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01344 208 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 61.702 1.62e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g01344 HLH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01344 K12126 - gmx:100818543 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02712 03 48458836 48461873 Cca02g01344 02 31863761 31866351 PCT