Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01341 ATGGGCAAAGCCTCTAGTTCTTCATCCTCATCTATCAACAGCTGCAAAAACCCTTCTAATTCAACTTCTTCCTCTCTCTCACACCAAAATAGTGGAGACCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCTGCCACTCAACATGTTGGCTCTTCTAGTTCAGGGGGGCACTGGCAACCGGTGCAGCCACATCTAAGTTGTTCACAAGTTACTGAGGTGAATGATTGCAGTGATTATACCAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATTGGTAGAAAACTCAACTTGTTAGCTCATGATGGCTACCACGAGTTAGTAAAGGCCCTTGAACAAATGTTTGACACCACCATTCTGTGGGGGACTGAGATGGATGGAGTGCAACCAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGGGATGTGCCTTGGGAAATGTTCTTATCATCTGTAAAGAGGTTGAAGATCACAAGGGTCGAGGCATTCGGGTGA 525 0.4514 MGKASSSSSSSINSCKNPSNSTSSSLSHQNSGDLRTDLRLGLSISATQHVGSSSSGGHWQPVQPHLSCSQVTEVNDCSDYTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKALEQMFDTTILWGTEMDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVEAFG 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01341 174 Pfam AUX/IAA family 79 169 IPR033389 -
Cca02g01341 174 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Cca02g01341 174 SUPERFAMILY CAD & PB1 domains 80 168 - -
Cca02g01341 174 MobiDBLite consensus disorder prediction 1 33 - -
Cca02g01341 174 Gene3D - 76 173 - -
Cca02g01341 174 PANTHER AUXIN-INDUCED PROTEIN 2 174 - -
Cca02g01341 174 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 174 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01341 Cca-Chr2 31826442 31828094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01341 86 167 B3 DNA Binding Superfamily AT4G23980 40.244 1.08e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca02g01341 AUX_IAA 6.7e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01341 K14484 - gmx:100781660 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02713 03 48477119 48478161 Cca02g01341 02 31826442 31828094 PCT