Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01339 ATGGAAAACCACCACCAAATGCAACAACCACTCTGTGAATCCACGACCATACTCAGATCCACCGGTTTCCTCCCTCACAATCTCACTCTAGATCCCACAACCGCCATCACCGGAGAGTATGCCGCTGATTCTTCCATCAGAGAAGTTCACTTTCTCTCATCAAGTTCACACCACACTCCAGACAGTCACATGAATATCTCTAAAGACCATGGATCACCAACTCTTTTCACTCATCACGTAGTAAACACCACGCTGAATTTAACATCGTCAAGTTCATCAGCAAATGATGAAGATCATACAACTCTGCACAGTACACTTCGAACGGAAGTATCAATACTAAAGGAAGAAAATTGTCAGCTGAGAACTATGTTAGATCAAATCACCAGAAATTACCACCAGCTACAATTGTTCGCTGCTATGCAGAAACAAAAGCCGCATCAGGCTCGTCCTGATCCTGTAGAAGATGTTCCTGAACAATCATCTTCACAGAGTTGGGGATCATCCAAGAATCTAAAGTTCGAAGAATCCAAGCCTAGTGAACATCCTTTCAAAAAACCCAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCTCTGATTAGCGATGGATGTCAATGGAGAAAATATGGACAAAAAATAGCGAAGGCTAATCCTTGTCCCCGTGCCTATTATCGTTGCACTATGGCCGTAGGATGCCCAGTTCGTAAGCAGGTGCAAAGATGCATGGAAGACATGACGGTGTTAATAACAACCTACGAAGGCAACCACAACCACCCTCTTCCACCTGCAGCCACAGCCATGGCCAATTCTACCTCAGCTGCTGCAACCATGTTCTTATCATCTTCAAGTTCTACAACTAATAACGAAGCACTAAACAGCACTAGTGTAGGAGTCTTCTCTTCGATGCCCTGCAGTATCCCAATGCCAACACTCTCAGCTTCTGCACCATTTCCCACTATCACTCTTGACATGACCACCAACCCTTTGCAACTGCACCAACATCCATTGCATGCAGCTGCTACTTTTCCTCAGCTACTAGGACACCCCGTAATGTTACCCCAAAAGATGTCACATCCACTAGGTCAACGACAACCTTCGTCTATGATGGAGACAGTGACTGCAGCTATTGCTTCCGATCCAAGCTTCACTGTAGCATTGGCAACTGCGATCTCATCGATTATTGGAGCTCATGGAAGCAGTGATGGAATAAATAACAATAGCAATGGCCAAAGTGTTCCGCTTCTTAATGGGATACCTATTTTGCCTGGATCTACGTCCACTTAG 1281 0.4528 MENHHQMQQPLCESTTILRSTGFLPHNLTLDPTTAITGEYAADSSIREVHFLSSSSHHTPDSHMNISKDHGSPTLFTHHVVNTTLNLTSSSSSANDEDHTTLHSTLRTEVSILKEENCQLRTMLDQITRNYHQLQLFAAMQKQKPHQARPDPVEDVPEQSSSQSWGSSKNLKFEESKPSEHPFKKPRVSVRARSEAPLISDGCQWRKYGQKIAKANPCPRAYYRCTMAVGCPVRKQVQRCMEDMTVLITTYEGNHNHPLPPAATAMANSTSAAATMFLSSSSSTTNNEALNSTSVGVFSSMPCSIPMPTLSASAPFPTITLDMTTNPLQLHQHPLHAAATFPQLLGHPVMLPQKMSHPLGQRQPSSMMETVTAAIASDPSFTVALATAISSIIGAHGSSDGINNNSNGQSVPLLNGIPILPGSTST 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01339 426 MobiDBLite consensus disorder prediction 156 172 - -
Cca02g01339 426 SMART WRKY_cls 199 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca02g01339 426 Gene3D WRKY domain 184 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca02g01339 426 ProSiteProfiles WRKY domain profile. 194 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca02g01339 426 Pfam WRKY DNA -binding domain 201 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca02g01339 426 SUPERFAMILY WRKY DNA-binding domain 192 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca02g01339 426 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 41 149 - -
Cca02g01339 426 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 154 408 - -
Cca02g01339 426 MobiDBLite consensus disorder prediction 173 189 - -
Cca02g01339 426 MobiDBLite consensus disorder prediction 141 189 - -
Cca02g01339 426 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 41 149 IPR044810 GO:0003700
Cca02g01339 426 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 154 408 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01339 Cca-Chr2 31790710 31801737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01339 172 393 WRKY Transcription Factor Family AT4G04450 55.000 3.64e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca02g01339 WRKY 3.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01339 - - ccaj:114916465 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02715 03 48501134 48504869 Cca02g01339 02 31790710 31801737 PCT