Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01329 atggaaaaaaaaacaaCACTTATCTCTGCTGTTTCTCTGATTCTCGTAGTGGGCGTTGCCGTGGGCGTTGTTGCTATGGTCTCCACCGGCGGCGGCGACGACAACGTCCCGAACCAAACTAATGAAAACAAAGACGGTCAATTGAACACCCACGCCAAAGCCGTGCAAGTCGCTTGCCAAGACTCCGATGACAATAAGTTTTGCGTGGACACCCTCAGCTCTGTGAACACCTCAGACCCAGCGGATTACATAAAAACGGTGGTGAAAAACTCCATGGACGACGTCATCAAAGCCTTCAACTTAAGCGACACTATCGTCCTGGAAAATGGCAAGCAGAACTCTAGCTTGAAGATGGCCATCGAAGACTGCAAAGACTTGTTGTTCTTCGCCATCGACGAATTAGAAGCCTCGAAGATTTTCGTCAGAGACAACAACATTAACAACATCCACGACCGCGTTGCGGACCTCAAAAACTGGTTGGGCGCGGTCGTAGCGTACCAGCAATCGTGCCTTGACGGTTTCGACTCGGACGCTGAAAAAGAGGTGCAGGCGAGGTTGCAGACCGGGGGTTTAGACAACCTCGGAAAGTTATCGGCGTTAGCACTTGACATTGTCGCAGGTTTGGCGCAGATACTCAACGCGTTAAACTTGAACCTAAGCACAAAACCTACTTCGTCTTCTCGGCGACTTCTTGACGTGGAACCAGATGGATTCCCGTCGTGGATGTCCGTCGCGGATCGCAAGCTTTTGGCGGGAAATTCTGTTGCACCCAATGCGGTTGTTGCAAAGGATGGGAGTGGACAATATAAGACTATTTTGGATGCTATTAACTCCTACCCTAAGAACCATCAAGGTAGATACGTTATTTATGTTAAGGCTGGTGTTTATGATGAGTACATCACGGTTGACAAAAAGAAGCCCAATCTGTTGATCTATGGTGATGGCCCCACTAAGACCATTGTCACCGGTAGCAAAAACTTCAAGGATGGCTGGAAGACAATTAGAACTGCTACATTCTCGACGGTTGCAGAAGATTTTATTGCAAAGTCGATGGCATTTGAGAACACCGCCGGGGCGAGCAAACACCAAGCAGTGGCGCTTCGCGTGCAAGGTGATCGTTCCGCCTTCTTCGACTGCGCCATGCACGGATTCCAGGACACTCTATACGCCCACGCGCACCGTCAGTTCTACCGCAACTGCGAAATCTCGGGTACAGTGGACTTCATCTTCGGCTACGGCACCACCCTGATCCAAAGTTCCAAGATCATAGTGCGCAAGCCAGACCCGAATCAACAAAACATAGTTGTCGCCGACGGCACGGACCAGAAGAACATGCCCACGGGAGTGGTGCTTCAGAACTGCCAGATCCTGCCGGAGGCGGCGCTGGAGCCCACCAAGTTGACGGTGAAGTCGTACTTGGCGAGGCCCTGGAAGGCGTATTCGAGGGCCATCTTCATGGAAAACACTATCGGTGATTTGATTCAGCCAGATGGGTTTCTACCCTGGTCAGGGAACCAGTTTCTTGACACGTGTTTCTTCGCTGAGTATGCCAACACTGGCGCCGGCGCCGATGTTAAAACTAGGGTTAAGTGGAGCCGCGGTGTCCTAACCAAGGGTGATGCTGCCAAATACACTGCTGATCAATGGCTCCAAGCCAACTCATGGTTACCCGCCACTGGTATACCCTTCGATCTTGGCTTGACTAAGTAA 1710 0.507 MEKKTTLISAVSLILVVGVAVGVVAMVSTGGGDDNVPNQTNENKDGQLNTHAKAVQVACQDSDDNKFCVDTLSSVNTSDPADYIKTVVKNSMDDVIKAFNLSDTIVLENGKQNSSLKMAIEDCKDLLFFAIDELEASKIFVRDNNINNIHDRVADLKNWLGAVVAYQQSCLDGFDSDAEKEVQARLQTGGLDNLGKLSALALDIVAGLAQILNALNLNLSTKPTSSSRRLLDVEPDGFPSWMSVADRKLLAGNSVAPNAVVAKDGSGQYKTILDAINSYPKNHQGRYVIYVKAGVYDEYITVDKKKPNLLIYGDGPTKTIVTGSKNFKDGWKTIRTATFSTVAEDFIAKSMAFENTAGASKHQAVALRVQGDRSAFFDCAMHGFQDTLYAHAHRQFYRNCEISGTVDFIFGYGTTLIQSSKIIVRKPDPNQQNIVVADGTDQKNMPTGVVLQNCQILPEAALEPTKLTVKSYLARPWKAYSRAIFMENTIGDLIQPDGFLPWSGNQFLDTCFFAEYANTGAGADVKTRVKWSRGVLTKGDAAKYTADQWLQANSWLPATGIPFDLGLTK 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01329 569 Pfam Pectinesterase 258 552 IPR000070 GO:0030599|GO:0042545
Cca02g01329 569 PANTHER PECTINESTERASE 3 567 - -
Cca02g01329 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 206 IPR035513 -
Cca02g01329 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 209 IPR035513 -
Cca02g01329 569 SUPERFAMILY Pectin lyase-like 255 566 IPR011050 -
Cca02g01329 569 Pfam Plant invertase/pectin methylesterase inhibitor 54 204 IPR006501 GO:0004857
Cca02g01329 569 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Cca02g01329 569 Gene3D - 252 567 IPR012334 -
Cca02g01329 569 CDD PMEI-like_3 58 209 - -
Cca02g01329 569 PANTHER PECTINESTERASE 3 567 - -
Cca02g01329 569 TIGRFAM PME_inhib: pectinesterase inhibitor domain 48 203 IPR006501 GO:0004857
Cca02g01329 569 SMART PMEI_2 50 204 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01329 Cca-Chr2 31627976 31630110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01329 2 567 Carbohydrate Esterase AT3G05610 39.168 9.13e-140 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01329 K01051 - gmx:100820142 908.286