Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01328 ATGAATGGGAAAATTCTTGTCTCTGGTGTTTCCCTCATCCTGGTGGTGGGTGTAGCCATCGGTGTTGTGGTCGTGGTTAACAAAAAGGACACATCTGATCCTCAAGTAGCAACTCACCAAAAATCGGTGAAGCTAATGTGCGAGGGCACAGAGGACCCTAAGCTATGTCACGACACTCTCAACACTGTGAAATCTGAGAACGCCTCAGATCCAAAGGTTTACATAGCAGCTGCGGTGGAAACAACCGTGAAGAGCGTAATCCAAGCGTTGAACATGAGCGACAGGCTCACAGTGGAACATAGCGACAACAACCCGGGCCTCAAAATGGCTTTGGACGATTGCAAGGACTTGATCGAGTTCGCGATGGACAGCATCGAGTCCTCCATTAACCTTGTTCGAGATAGCAACATTCAATCGCTGCATAACCGTGCTCCTGACTTTAGAAACTGGTTGAGCGCCATAATCTCGTACCAACAATCATGCATGGACGGTTTCGACAGTGGCAAAGAGGGTGAGGAGAAGGTTAAGGAAGAGTTGCACACACAAAGTTTGGACCAAATGGGGAAACTCACCGGCATAATCCTTGACATTGTCACTAACTTATCAAAAATCCTTAAGAGTTTTAATTTGAAGCTGGATTTGAGTCCCGCTTCCCGTCGTCTTCTGGAAGTTGATAACGAAGGGTTTCCTACGTGGTTCTCTGCTGCAGATCGCAAGCTCCTTGCTAAGGTGGAACAAGGAGATGCTCCGCCACCAAACGCAGTGGTTGCTAAGGATGGTAGTGGTAAATTTAAAACCGTTAAGGAGGCTATTGACTCCTACCCTAATGGCTTCGAAGGTAGGTTTGTTATTTACGTTAAGGCTGGAACCTATGACGAGTACATCACCATTCCTAAGAAGTCCGCAAATATTCTCCTCTACGGTGATGGCCCCGCAAAGACCATTATTACCGGTAGCAAAAACTTTGTAGATGGTGTCAAGACAATGCAAACTGCTACCTTCGCCAACACAGCACCTGGATTCATCGCAAAGTCGATAGCGTTCGAGAACACAGCTGGTGCAAAGAAGCATCAGGCAGTGGCATTCAGAAACCAGGGAGACTTGTCAGCGTTATTCGACTGCGCCATGCGAGGTTACCAAGACACGTTGTACGTTCATGCAAACCGTCAATTCTACCGAAACTGCGAAATCTCGGGCACCATAGACTTCATCTTCGGTGCATCTGCAGCCCTGATCCAGAACTCTAAAATCATCGTGAGGATGCCAGAACCTAACCAGTTCAACACAGTGACTGCAGATGGGACGAAGCAGAAGAACATGGCCACAGGGATTGTTATTCAGAACTGCGAGATAGTGCCAGAGCAGGCTCTGGTCCCTTCGAAGTCCCAAATAAAATCATATTTGGGAAGACCGTGGAAGCAATTTTCGAGAACAGTGGTTATGGAATCAAACATAGGTGACTTTATTCAGCCAGAAGGGTGGACTCCGTGGGATGGTGACATGTATCTTGACACGTTGTACTATGCTGAGTACGCTAATACTGGACCTGGTTCTAATGTTCAAGGAAGGGTGAAGTGGAAGGGTTACCACCCCAATATTCCTAAGAACGAAGCACAGCAATTCACTGCTGGCGAATTCCTCAGAGGTGGAACTTCTGGAAATGCTGATGATTGGTTGAAAGCCACGGGAGTTCCTTACACCATTGGCTTCACCAAATAA 1719 0.4724 MNGKILVSGVSLILVVGVAIGVVVVVNKKDTSDPQVATHQKSVKLMCEGTEDPKLCHDTLNTVKSENASDPKVYIAAAVETTVKSVIQALNMSDRLTVEHSDNNPGLKMALDDCKDLIEFAMDSIESSINLVRDSNIQSLHNRAPDFRNWLSAIISYQQSCMDGFDSGKEGEEKVKEELHTQSLDQMGKLTGIILDIVTNLSKILKSFNLKLDLSPASRRLLEVDNEGFPTWFSAADRKLLAKVEQGDAPPPNAVVAKDGSGKFKTVKEAIDSYPNGFEGRFVIYVKAGTYDEYITIPKKSANILLYGDGPAKTIITGSKNFVDGVKTMQTATFANTAPGFIAKSIAFENTAGAKKHQAVAFRNQGDLSALFDCAMRGYQDTLYVHANRQFYRNCEISGTIDFIFGASAALIQNSKIIVRMPEPNQFNTVTADGTKQKNMATGIVIQNCEIVPEQALVPSKSQIKSYLGRPWKQFSRTVVMESNIGDFIQPEGWTPWDGDMYLDTLYYAEYANTGPGSNVQGRVKWKGYHPNIPKNEAQQFTAGEFLRGGTSGNADDWLKATGVPYTIGFTK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01328 572 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Cca02g01328 572 Gene3D - 250 570 IPR012334 -
Cca02g01328 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 202 IPR035513 -
Cca02g01328 572 Pfam Plant invertase/pectin methylesterase inhibitor 42 197 IPR006501 GO:0004857
Cca02g01328 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 201 IPR006501 GO:0004857
Cca02g01328 572 CDD PMEI-like_3 45 203 - -
Cca02g01328 572 SUPERFAMILY Pectin lyase-like 249 569 IPR011050 -
Cca02g01328 572 SMART PMEI_2 38 197 IPR006501 GO:0004857
Cca02g01328 572 PANTHER PECTINESTERASE 3 570 - -
Cca02g01328 572 Pfam Pectinesterase 253 549 IPR000070 GO:0030599|GO:0042545
Cca02g01328 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 203 IPR035513 -
Cca02g01328 572 PANTHER PECTINESTERASE 3 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01328 Cca-Chr2 31609987 31612435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01328 5 570 Carbohydrate Esterase AT3G05610 41.125 4.74e-143 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01328 K01051 - gmx:100789650 957.592