Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01327 atgagtgaaggaggaaGGGCAGGCCCAGACCTGTTCATACTTCACTGTACCGGCGGGTGCGTGTATTCTGTAATCTGTATACCTCGCAAGTCAAGTCTGGCTAGCAAGAACTCGTTCCACTCTTTTATCCTGCGCACCCCTCTCCGTTTATCCTGCGCATCTTTCGCCGCTTTCGGAACTGAGATCCTCTCCTCCACATCCTCAGTTCCGCCATTTCAGTGGGAAAAAATCATGAGTTGTTTTGGCTGTTGCGAAGATGATGACCTCAACAAGGCTGCTGAAAACGGAGGACCCTATGTTGTAAAAAACCCAGCTGGAAATGATGGGAATTACCATGCTTCTGAAACTGCAAAGCAGGGCGCTCAGCCTGTTAAAGCTCAGCCCATTGAAGTTCCTAATATACAAGCAGATGAACTAAAAGAAGTTACGGATAACTTTGGTCAAGATTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTTCTCTTAAAAGTGGGCAGGCTGCAGCAATCAAGAAGTTGGATGCTAGTAAACAGCCTGACGAGGAATTTCTAGCCCAAGTTTCAATGGTATCAAGGCTGAGGCATGAAAATTTTGTTCAGTTGCTTGGATATTGCATTGATGGAAGCTCCCGTATTCTTGCTTACGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCAGTTTTGACATGGGCACAACGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGACTTGAATACTTGCATGAGAAGGCTGATCCCCACATAATCCATCGGGACATCAAGTCAAGCAATGTGCTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTATCAAATCAGGCTCCAGACATGGCTGCACGTCTTCATTCTACTCGTGTCCTTGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGGCAATTGAATGCCAAGAGTGATGTATACAGTTTTGGTGTTGTCCTTCTGGAACTTCTGACTGGAAGGAAACCTGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAAACTTAGCGAGGATAAAGTCAGGCAGTGTGTTGATACACGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCCAAGATGGCTGCTGTTGCTGCACTGTGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTTAAAGCTCTTCAACCTTTGTTGACTGCACGACCTGGACCTGCCGGTGAAACACCAAATTAA 1317 0.4457 MSEGGRAGPDLFILHCTGGCVYSVICIPRKSSLASKNSFHSFILRTPLRLSCASFAAFGTEILSSTSSVPPFQWEKIMSCFGCCEDDDLNKAAENGGPYVVKNPAGNDGNYHASETAKQGAQPVKAQPIEVPNIQADELKEVTDNFGQDSLIGEGSYGRVYYGSLKSGQAAAIKKLDASKQPDEEFLAQVSMVSRLRHENFVQLLGYCIDGSSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETPN 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01327 438 SUPERFAMILY Protein kinase-like (PK-like) 127 422 IPR011009 -
Cca02g01327 438 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
Cca02g01327 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Cca02g01327 438 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 78 436 - -
Cca02g01327 438 CDD STKc_IRAK 152 425 - -
Cca02g01327 438 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 78 436 - -
Cca02g01327 438 Pfam Protein tyrosine and serine/threonine kinase 150 422 IPR001245 GO:0004672|GO:0006468
Cca02g01327 438 Gene3D Transferase(Phosphotransferase) domain 1 221 430 - -
Cca02g01327 438 SMART serkin_6 146 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01327 438 ProSiteProfiles Protein kinase domain profile. 146 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01327 438 Gene3D Phosphorylase Kinase; domain 1 107 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01327 Cca-Chr2 31597914 31602634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01327 137 423 Receptor kinase-like Gene Family AT4G02010 51.890 2.52e-90 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Cca02g01327 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01327 K13436 - gmx:100808383 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01327 02 31597914 31602634 Cca02g01327 02 31597914 31602634 ECH