Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01325 ATGGAAGCTAGATTTGGTGCTGAAGCTTATCATTTTTATGGAGTGGGTGCTTCCTCCGATTTGAGGGGTTTGGGGAAGAGGTCCTCGGAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATAGCTAGTCGGCTGAATCCGGTGCCGGCAGATGGTGTGGGAGTGGGACAACATTTTTTCCCTCTTGGGTCTGGGATCCCGGTGCCGGTGGCTGGAGGTCCCTCTAACAGTTCTTCTTCCTGCTCTGAGGAAGTAGATCCTAGGGATCCGAAGGGGAACAAGGAAGGGGACAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGGTTTGAACGAGGAAGCAGGTACTCTTAGCTTAAAGCTTGGTGGTCATGCTTCTACAGTGGTGGATAGGGAAGTTGCGAGCTGGGATGGTATGAATGGGAAGAAAAGTAGAGTATCTGGAAGTACTTCAAGTCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCTGATCTAAGCAAAGCTAAGGATTATCATAGACGACATAAAGTTTGTGAGATGCACTCAAAGGCCAGTAAGGCTCTTGTGGGGAATGCAATGCAGAGATTTTGTCAACAATGTAGCAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGGAAGAGAAGCTGCCGAAGGCGGTTGGCAGGCCATAATAAACGAAGAAGGAAAACAAATCATGAAGTTGTTCCTAATGGAAATTCATTAAATGATGATCAGACTAGTAGCTATCTTTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGACTACAGATCAGGATCTACTAACTCATATTCTGAGGAGTCTTGCTAGTCAGAATGGTGAGCAAGGGAGCAAGAACATATCTAACCTTTTGCGTGAACCAGAAAATTTGCTGAGAGAAGGGGGTTCATCAAGGAAGTCTGAGATGGTGTCAACTCTATTCTCCAATGGATCTCAAGGCTCTCCAACTGATACTAGAAAACATGAAACCGTATCTGTGGCTACAATGCAGCAACAGATGCATGCACATGATGCTAGGGCTGCTGATCAGCATGTCATGTCTTCTATAAAGCCCAGTGTTTCAGACAGTCCTCCGGCCTACTCAGAAGCCAGGGACAGTACTGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGTATGGAAGATTTAGAAAGATTGCCTGTCTCTACAAATCTTGTGACTGGCTCTCTTGATTACCCATGGACACAACAAGATTCTCATCAGTCAAGTCCACCCCAAACAAATGGAAATTCAGATTCTGCATCTGCTCAGTCTCCTTCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAGCTCTTCGGTAAAGAGCCAAATGATTTTCCTCTTGTACTCAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGATATGGAGAGCTACATACGTCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAGGCTTTGTGGGAGGAACTTTGCTATGATCTGACTTCAAGTTTGAGTAGGCTGCTGGATGTCTCAGATGATACTTTTTGGAGAAATGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTTTTAATGGTCAAGTTGTCATAGATACCTCCTTACCTTTCAGAAGTCACAGTTATAGCAAGATTTTGACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAAAGCTCAATTTTCTGTTAAGGGTGTCAACCTGATACGCCCTGCTACTAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGCCCTGTGAAGATGCTGATGTGCCAATGGATCAATACTCCAAAGAGTCTGATGAACTTCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATTGTTGTGGAGGAGGATGTTTGCTCAGAAATCTGTGCACTTGAGCCTCTTCTAGAATTAAGTGAAACTGATCCGAATATTGAAGGGACTGGAAAAATTAAAGCCAAAAATCAAGCCATGGATTTTATTCATGAAATGGGCTGGCTTCTTCACAGAAGTCAAATGAAATTAAGGATGGTTCAGTTGAACTCTAGTGTGGATCTCTTTTCATTGAAACGGTTCAAGTGGCTAATTGAGTTTTCCATTGATCATGATTGGTGTGCAGTAGTGAAAAAACTGTTGAATCTACTTCTTGATGGAACTGTAAATACAGGAGATCATCCTTCCCTGTATATTGCACTTTCAGAGATGGGTCTCCTTCACAAAGCTGTAAGGAGAAATAGCAAGCAATTAGTGGAGTTGCTTTTGAGATATGTTCCTGAGAATATTTCTTATGAACTAGGACCTGAAGGCAAGGCATTAATTGATGGAGATAATCAGACCTTTTTGTTTAGACCTGATGTTGTTGGTCCTGCCGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGATTCTGAGGATGTACTCGATGCTTTAACTAATGATCCCTGCACGGTGGGAATTGCAGCATGGAAAAATGCTCGTGATAGCACAGGTTCCACACCAGAGGATTATGCACGTTTACGTGGCCATTATGGTTACATTCACTTGGTGCAGAAAAAAATTAACAAGAGACAAGGAGCAACTCATGTGGTGGTTGAGATTCCAAGCAATACGACAGAGAACAATACAAACCAGAAGCAAAATGAGTCATCCACTAGCTTTGAGATTGGAAAGGCTGAAGTAAGGCTTAGCCAACGGCACTGTAAAGTTTGTGACACTAAATCTTCTTGTAGAACTGCAGTAGGCAGGTCTTTGGTATACAGACCTGCAATGCTCTCAATGGTGGCCATAGCCGCAGTCTGTGTCTGTGTAGCCCTTCTGTTTAAAAGCTCACCGGAAGTTATATGTATGTTCCGACCCTTCAGGTGGGAAACCTTGGACTTTGGAACAAGCTAA 3048 0.4314 MEARFGAEAYHFYGVGASSDLRGLGKRSSEWDLNDWRWDGDLFIASRLNPVPADGVGVGQHFFPLGSGIPVPVAGGPSNSSSSCSEEVDPRDPKGNKEGDKKRRVIVLEDDGLNEEAGTLSLKLGGHASTVVDREVASWDGMNGKKSRVSGSTSSRAVCQVEDCSADLSKAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNHEVVPNGNSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHILRSLASQNGEQGSKNISNLLREPENLLREGGSSRKSEMVSTLFSNGSQGSPTDTRKHETVSVATMQQQMHAHDARAADQHVMSSIKPSVSDSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSTNLVTGSLDYPWTQQDSHQSSPPQTNGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEALWEELCYDLTSSLSRLLDVSDDTFWRNGWVHIRVQHQMAFIFNGQVVIDTSLPFRSHSYSKILTVSPIAVPASKKAQFSVKGVNLIRPATRLMCALEGKYLPCEDADVPMDQYSKESDELQCIQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICALEPLLELSETDPNIEGTGKIKAKNQAMDFIHEMGWLLHRSQMKLRMVQLNSSVDLFSLKRFKWLIEFSIDHDWCAVVKKLLNLLLDGTVNTGDHPSLYIALSEMGLLHKAVRRNSKQLVELLLRYVPENISYELGPEGKALIDGDNQTFLFRPDVVGPAGLTPLHIAAGKDDSEDVLDALTNDPCTVGIAAWKNARDSTGSTPEDYARLRGHYGYIHLVQKKINKRQGATHVVVEIPSNTTENNTNQKQNESSTSFEIGKAEVRLSQRHCKVCDTKSSCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWETLDFGTS 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01325 1015 MobiDBLite consensus disorder prediction 364 384 - -
Cca02g01325 1015 Gene3D - 149 220 IPR036893 GO:0003677|GO:0005634
Cca02g01325 1015 MobiDBLite consensus disorder prediction 223 245 - -
Cca02g01325 1015 MobiDBLite consensus disorder prediction 289 384 - -
Cca02g01325 1015 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1014 - -
Cca02g01325 1015 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1014 IPR044817 GO:0003677
Cca02g01325 1015 MobiDBLite consensus disorder prediction 87 103 - -
Cca02g01325 1015 Gene3D - 757 918 IPR036770 -
Cca02g01325 1015 MobiDBLite consensus disorder prediction 315 349 - -
Cca02g01325 1015 MobiDBLite consensus disorder prediction 73 103 - -
Cca02g01325 1015 Pfam SBP domain 159 232 IPR004333 GO:0003677
Cca02g01325 1015 SUPERFAMILY Ankyrin repeat 783 901 IPR036770 -
Cca02g01325 1015 SUPERFAMILY SBT domain 157 238 IPR036893 GO:0003677|GO:0005634
Cca02g01325 1015 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Cca02g01325 1015 MobiDBLite consensus disorder prediction 423 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01325 Cca-Chr2 31558472 31566776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01325 1 1015 SBP-box Gene Family AT3G60030 54.360 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca02g01325 SBP 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01325 - - gmx:100809806 1825.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01325 02 31558472 31566776 Cca02g01325 02 31558472 31566776 ECH