Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01324 ATGGTAACGTCTTTTAGGAAGGTTGCCGTCAAATCTAACGGCTACACAGTTTCGACGATCACAGTTTTCGGTAGCCGGTCACGCGCGCCGTTGGCGTCTACAAATAGAGAGTCGTTGGACGTGAGACAGTGTGCTTCGAGCGAGTCCTCTTCATTCCAAACTCTTCTTCGTATCTCTCTCTCACCACAGCTTGAGAAATGGCGACAGAGACATTTCTATTTACCTCTGAATCCGTCAACGAGGGATCCTGACAGCAAGGTTGCCTGCGAGACATGCACCAAGACTAACATGGTCATGGTCTTTGGAGAGATCACAACCAAGGCCAACGTAGACTACGAGAAAATTGTCCGCAACACGTGCCGCAACATTGGATTTGTCTCCGACGATGTGGGCCTTGATGCAGACAAGTGCAAGGTGTTGGTCAACATTGAGCAACAAAGCCCTGACATTGCCCAAGGTGTGCATGGGCACTTCACCAAGAACCCAGAGGAGATTGGTGCAGGTGACCAGGGTCACATGTTTGGTTACGCCACTGATGAAACCCCTGAATACATGCCACTGAGCCATGTCCTTGCAACAAAACTAGGAGCTCGCCTTACTGAGGTTAGAAAGAATGGGACATGCGCTTGGTTGAGACCAGATGGTAAGACACAAGTGACTGTAGAGTATTACAATGAGAATGGTGCCATGGTTCCAGTTCGTGTCCACACTGTCCTCATTTCCACTCAGCATGATGAGACTGTGACTAATGAAAAAattgctgcggatcttaaggagcatgttatcaagcctgtgattcctgagaagtacttggataacaagaccatcttccaccttaacccttctgggagatttgtcattggtggtcctcatggtgatgctggtctcactgggaggaagattatcattgatacttatggtggttggggtgcacatggaggtggtgccttctcagggaaagaccctactaaggttgatagaagtggtgcctatgttgcgaggcaggcagcaaagagtattgtagcaagtggacttgcccgcaggttcctcaagacagctgcctatggacactttggaagggaggaccctgacttcacctgggaagttgtgaagccactcaagtgggagaagcctCAAGCTTAA 1143 0.3263 MVTSFRKVAVKSNGYTVSTITVFGSRSRAPLASTNRESLDVRQCASSESSSFQTLLRISLSPQLEKWRQRHFYLPLNPSTRDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRNTCRNIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKNPEEIGAGDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNEKIAADLKEHVIKPVIPEKYLDNKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASGLARRFLKTAAYGHFGREDPDFTWEVVKPLKWEKPQA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01324 380 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 81 349 - -
Cca02g01324 380 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 348 380 - -
Cca02g01324 380 Pfam S-adenosylmethionine synthetase, central domain 164 285 IPR022629 GO:0004478|GO:0006556
Cca02g01324 380 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 81 349 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca02g01324 380 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 348 380 IPR002133 GO:0004478|GO:0005524|GO:0006556
Cca02g01324 380 SUPERFAMILY S-adenosylmethionine synthetase 81 156 IPR022636 GO:0004478|GO:0006556
Cca02g01324 380 SUPERFAMILY S-adenosylmethionine synthetase 287 377 IPR022636 GO:0004478|GO:0006556
Cca02g01324 380 SUPERFAMILY S-adenosylmethionine synthetase 162 286 IPR022636 GO:0004478|GO:0006556
Cca02g01324 380 ProSitePatterns S-adenosylmethionine synthase signature 1. 166 176 IPR022631 GO:0004478|GO:0006556
Cca02g01324 380 Pfam S-adenosylmethionine synthetase, C-terminal domain 287 349 IPR022630 GO:0004478|GO:0006556
Cca02g01324 380 ProSitePatterns S-adenosylmethionine synthase signature 2. 313 321 IPR022631 GO:0004478|GO:0006556
Cca02g01324 380 Gene3D - 77 179 - -
Cca02g01324 380 CDD S-AdoMet_synt 82 371 - -
Cca02g01324 380 Gene3D - 349 371 - -
Cca02g01324 380 Pfam S-adenosylmethionine synthetase, N-terminal domain 81 148 IPR022628 GO:0004478|GO:0006556
Cca02g01324 380 Gene3D - 180 287 - -
Cca02g01324 380 Gene3D - 309 348 - -
Cca02g01324 380 TIGRFAM metK: methionine adenosyltransferase 81 349 IPR002133 GO:0004478|GO:0005524|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01324 Cca-Chr2 31553981 31557011 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01324 K00789 - gmx:100812341 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01324 02 31553981 31557011 Cca02g01324 02 31553981 31557011 ECH
Cca11g02645 11 53719136 53721896 Cca02g01324 02 31553981 31557011 ECH
Cca08g01281 08 38458032 38460347 Cca02g01324 02 31553981 31557011 ECH
Cca02g01324 02 31553981 31557011 Cca03g02731 03 48652756 48665651 PCT