Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01323 ATGGGAGGAAGTTCCAGTTTCAGGGACGAGTATACTTTCGAGCAAAGGCTCGAAGAATCACGGGATATTGTGGCCAAATACCCCGATCGTGTCCCCGTGATTGTGGAAAGGTATGCGAAATGCGATCTGCCTGAACTGGAGAAGAAAAAATACCTTGTTCCTCGAGACTTGTCTGTTGGGCATTTCATTCATATTTTGAGTTCCAGACTGAGTCTGCCCCCTGGAAAAGCTCTCTTTATATTTGTAAAGAATACCTTACCTCAAACTGCTAGTATGGTGGACTCTGTCTATAGATCATTCAAGGATGAGGATGGATTTCTTTACATGTATTATAGCACCGAGAAAACCTTCGGCTCAAGAGGAGGACACGTGCATGTAATGCTCTCTAGCATGGTTCTAATCCTCTCCGTTTTGCCATGGGCCTCGGCATCTCTGAAGGTGGATTTCTATAAAACTTCGTGTCCATCTGCAGAGGCAATAGTGAGAAGAGCTGTGAACAAAGCAGTTTCTCTGAACCCGGGCATCGCTGCTGGTTTGATCAGAATGCATTTTCATGATTGTTTTGTCAGGGGTTGTGATGGTTCAGTATTGTTAGAATCCACACCGGGAAATCCATCAGAGAGAGAACACCCAGCTAACAACCCAAGTTTACGAGGCTTCGAAGTCATCGAAGAGGCTAAGGCCCAAATAGAAGCAGAGTGTCCTCACACTGTGTCGTGCGCAGACATTCTTGCTTTTGCTGCTCGAGACAGCGCTAACAAAGTTGGGGGCATAAAGTACGAGGTTCCAGCTGGACGCAGAGACGGTCGTGTCTCTATAAGAGACGAAGCGTCACAACTGCCTCGTCCAACCTTTAACGCAAAGGAGCTTATTAGTAACTTCGAACAAAAAGGGTTGTCTGCAGATGAAATGGTAACACTCTCTGGAGCGCATTCTGTTGGTGTCTCACACTGTTCCTCCTTCTCCGATCGCTTGTACTCTTCCAATGCTACCTTTGCTCAGGATCCCTCTATGGACCCCAACTTTGCTTCGTCCTTGAAAAACAAGTGTCCACCACGGAGCAATGATGATAACACAGTGGTGCTGGATGCTTCCACCCCGAACCGTTTGGACAACAAGTACTACACGGGACTCAAGAACCATCGTGGTCTGTTGACCTCAGATCAGACGTTGATGACCAGCCCCTCAACGAGGCCAATGGTGCTGACCAATGCAAAACATGCTTCAATTTGGGCACGTAAGTTTGCTAAGGCAATGGTGCATATGGGTTCCATTGATGTGCTAACCGGCTCACAAGGCGAGATCAGGACTCGTTGCAGCGTCCTTAATTAA 1332 0.473 MGGSSSFRDEYTFEQRLEESRDIVAKYPDRVPVIVERYAKCDLPELEKKKYLVPRDLSVGHFIHILSSRLSLPPGKALFIFVKNTLPQTASMVDSVYRSFKDEDGFLYMYYSTEKTFGSRGGHVHVMLSSMVLILSVLPWASASLKVDFYKTSCPSAEAIVRRAVNKAVSLNPGIAAGLIRMHFHDCFVRGCDGSVLLESTPGNPSEREHPANNPSLRGFEVIEEAKAQIEAECPHTVSCADILAFAARDSANKVGGIKYEVPAGRRDGRVSIRDEASQLPRPTFNAKELISNFEQKGLSADEMVTLSGAHSVGVSHCSSFSDRLYSSNATFAQDPSMDPNFASSLKNKCPPRSNDDNTVVLDASTPNRLDNKYYTGLKNHRGLLTSDQTLMTSPSTRPMVLTNAKHASIWARKFAKAMVHMGSIDVLTGSQGEIRTRCSVLN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01323 443 PANTHER PEROXIDASE 25-RELATED 137 441 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 Gene3D - 2 118 - -
Cca02g01323 443 ProSiteProfiles Plant heme peroxidase family profile. 144 443 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 CDD secretory_peroxidase 145 441 IPR033905 GO:0004601|GO:0042744
Cca02g01323 443 Gene3D - 148 443 - -
Cca02g01323 443 PANTHER PEROXIDASE 137 441 - -
Cca02g01323 443 SUPERFAMILY Heme-dependent peroxidases 145 443 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Haem peroxidase superfamily signature 238 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Haem peroxidase superfamily signature 176 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Haem peroxidase superfamily signature 303 318 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Haem peroxidase superfamily signature 363 378 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Haem peroxidase superfamily signature 256 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 Pfam Peroxidase 161 405 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 Gene3D Peroxidase, domain 2 281 422 - -
Cca02g01323 443 ProSitePatterns Peroxidases active site signature. 176 187 IPR019794 GO:0004601
Cca02g01323 443 PRINTS Plant peroxidase signature 178 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Plant peroxidase signature 237 247 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Plant peroxidase signature 377 394 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Plant peroxidase signature 417 430 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Plant peroxidase signature 256 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Plant peroxidase signature 218 231 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Plant peroxidase signature 154 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Plant peroxidase signature 361 376 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 PRINTS Plant peroxidase signature 302 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca02g01323 443 Pfam Autophagy protein Atg8 ubiquitin like 15 118 IPR004241 -
Cca02g01323 443 SUPERFAMILY Ubiquitin-like 5 118 IPR029071 -
Cca02g01323 443 ProSitePatterns Peroxidases proximal heme-ligand signature. 303 313 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01323 Cca-Chr2 31536522 31540831 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01323 128 443 Peroxidase AT5G17820 45.253 6.95e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01323 K00430 - gmx:100815158 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01323 02 31536522 31540831 Cca02g01323 02 31536522 31540831 ECH