Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01319 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAGAACATGGCTGTGCTGGATTTGAAGCATTTTCCGAATAAGGGAAGCGATGTTCACGAGAACGGAGATGCAGATGCTAATTCGCCTCCGAGTTTTGACCGAGTTCGTGCTTCTGAGTCGGTCTCTGCCGAGTTACTCACTTCACAACAAGACGTTAGGTCTGCAGACAGGACCTCAGATGATACTCTTGAATCTGCGGTCCTGCAGTTTATTCCTTGCATCCGTTCTGGTAGTTTTGCAGACATTGGGCCAAGGAGATACATGGAAGATGAACATATAAGGATTGATGATTTGTCCTCTCATCTAGGATCACTATACAACTTTCCCAAACCAAGTGCCTTTTATGGGGTGTTCGATGGTCATGGAGGACCTGAAGCTGCAGCTTATATAAGAAAAAACGTGATGAAATTCTTCTTTGAAGATGTCAGTTTCCCACAGACATCTGAAGTCAATAATGTATTTTTGGAAGAGCTAGAGGATTCTCTCAGAAAGACTTTTCTTTTGGCTGACTCAGCTTTGGCCGATGATTGTAGTGTGAATAGTTCATCAGGCACCACGGCCCTTACTGCTTTAATATTTGGAAGGCTTCTAATGGTTGCCAATGCTGGTGATTGCCGAGCGGTTCTTTGTCGCAAAGGAGAGGCCATTGACATGTCTCAAGATCACAGGCCTATTTATCCAGCAGAGCGGAGGCGAGTTGAAGAATTGGGTGGCTACATAGATGATGGTTATCTCAATGGGGTTTTATCAGTTACTCGAGCATTGGGGGACTGGGACATGAAGTTACCAAAGGGTGCTCCCTCACCTTTGATTGCAGAGCCTGAGTTCCGGCAAGTGGTTCTAACAGAGGATGATGAATTCCTCATCATAGGATGCGATGGCATCTGGGATGTGATGTCAAGTCAGCATGCTGTTAGCCTTGTTCGCAGAGGCCTGAAGTGGCACAATGACCCTGAGAAATGCGCCAGGGACCTGGTTATGGAGGCATTACGCTTGAACACATTTGACAATCTCACAGTGATCATTGTATGTTTCTCTTCCCTTGACATGGAGCCAGAGCCATCTCCACCTTGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTATGTAGCCTGAGGAGCTTGTTGGAAGGCAGTGCTAGCAACTGA 1188 0.4672 MVAEAEVVCQQNMAVLDLKHFPNKGSDVHENGDADANSPPSFDRVRASESVSAELLTSQQDVRSADRTSDDTLESAVLQFIPCIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLYNFPKPSAFYGVFDGHGGPEAAAYIRKNVMKFFFEDVSFPQTSEVNNVFLEELEDSLRKTFLLADSALADDCSVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPAERRRVEELGGYIDDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFRQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRRGLKWHNDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDMEPEPSPPCQRKLRCCSLSAEALCSLRSLLEGSASN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01319 395 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 375 - -
Cca02g01319 395 CDD PP2Cc 84 355 IPR001932 -
Cca02g01319 395 Gene3D - 68 360 IPR036457 -
Cca02g01319 395 SMART PP2C_SIG_2 100 355 IPR001932 -
Cca02g01319 395 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Cca02g01319 395 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Cca02g01319 395 SUPERFAMILY PP2C-like 78 356 IPR036457 -
Cca02g01319 395 SMART PP2C_4 74 353 IPR001932 -
Cca02g01319 395 PANTHER PROTEIN PHOSPHATASE 2C 1 375 IPR015655 GO:0004722|GO:0006470
Cca02g01319 395 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01319 Cca-Chr2 31516576 31518844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01319 98 391 PP2C-type Phosphatase Gene Family AT3G62260 71.186 9.01e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01319 K14803 - gmx:100785388 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01319 02 31516576 31518844 Cca02g01319 02 31516576 31518844 ECH