Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01316 ATGGCATCAGCGGGTGTAGCGCCTGCTTCTGGATTAAGAGATGTAAATGCAAGTTTGGTTGCTGTTGAGAGGTTGCCTGATGAGATGAACGGCATGAAAATTAGGGATGAAAGGGAAATGGAAGAAACCGTGGTAGATGGAAATGGGACTGAAACAGGACATATAATTGTCACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCGAATTGTTGGACATGGATCGTTTGGTGTAGTTTTCCAGGCAAAGTGCTTAGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGCCTTCTGGACCATCCTAATGTTGTAGCTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAGGATGAGCTTTATCTTAATCTGGTTCTTGAGTATGTTCCTGAGACTGTCCATCGAGTTGTCAGACATTACAACAAAATGAATCAAAGAATGCCACTGATATATGTGAAACTCTATTTTTACCAGATATGTAGAGCACTGGCTTATATTCACAACTGTATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACTCACCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTTTTGGTCAAAGGGGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATATGGTCAGCTGGTTGTGTACTAGGTGAACTATTGCTTGGCCAGCCTCTCTTTCCTGGCGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGCACCCCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACTGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGATTTTTCACAAACGTTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACTGCTCTGGAGGCCTTGGTTCATCCATTTTTTGACGAACTGCGTGATCCAAATACCCGCCTACCAAACGGAAGATACCTTCCTCCACTCTTCAACTTCAGAGCCAGTGAGCTTAAGGGAGTGCCTCCAGAGATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGGATCATAG 1230 0.4309 MASAGVAPASGLRDVNASLVAVERLPDEMNGMKIRDEREMEETVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERIVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVVRHYNKMNQRMPLIYVKLYFYQICRALAYIHNCIGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRLPPEAVDLVSRLLQYSPNLRCTALEALVHPFFDELRDPNTRLPNGRYLPPLFNFRASELKGVPPEMLVKLIPSHARKQCALFGS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01316 409 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01316 409 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01316 409 SUPERFAMILY Protein kinase-like (PK-like) 72 384 IPR011009 -
Cca02g01316 409 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g01316 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 407 - -
Cca02g01316 409 CDD STKc_GSK3 68 360 IPR039192 -
Cca02g01316 409 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Cca02g01316 409 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Cca02g01316 409 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Cca02g01316 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cca02g01316 409 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01316 Cca-Chr2 31484965 31487726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01316 79 364 MAP Kinase Gene Family AT3G45640 34.576 8.13e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Cca02g01316 Pkinase 8.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01316 K00924 - gmx:100788046 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01316 02 31484965 31487726 Cca02g01316 02 31484965 31487726 ECH