Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01315 ATGAGGCATTCTAATATTTTACCACTAGTATTCTCCTTATATTTTCTTACTTTATTTCTTCCCATCCAAGCTAGGCACCATTACCATACCAAACACAAGCACTCACATTATCATAATTCACCTGAAATTTCACCATCTCCTGCTCCATTCTCTGCACCTTCTAGTGCTCCTGATGAAGCTCCTAGTCCTAGCCCCAGTTTTAACGAGAACTACCATAATGCATCAAACTTTTTCGATTTACGAACATTTGGGGCCATTGGAGATGGAATAACAGATGATACAGAGTCATTCAAGATGGCTTGGGACACTGCCTGCCAGAGTGAATCATCGGTTAAAACAATCATCGTTCCCCGTGGTCTCTCTTTCATTATTCAATCTACTATTTTCACTGGTCCCTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTTATACCACCTGATGGACCTGAATCATGGCCAAAGAACAACAGTAGGCGTCAATGGCTTGTCTTTTACAGAATCAATGGAATGTCACTTGAAGGAAGTGGTGTAATAGATGGGAGAGGAGCAAAATGGTGGGACCTTCCTTGCAAGCCTCATAAGGGACCTAATGGGACAACATCTCCAGGACCTTGTGACAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGACTTAGGATCAAGAACAGCCCCCAATTCCATTTTAGATTTGATGGCTGCGAAAGTGTCCACGTGGATTCAATCTTCATTACAGCTCCAGCACTAAGCCCCAACACGGATGGAATACACATAGAAAATACCAATGACGTGAAAATATACAATTCGGTCATTTCTAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATGACATGTGGACCTGGTCATGGGATTAGCATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATTACGGTGAGGGACTCGGTCATAAAAGTGTCAGATAACGGGGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAAGAGTGACATTCAGCAATATTCACATGGAAAGTGTAAGGAATCCAATCATAATTGACCAGTTTTATTGCCTCACTAAGGATTGCAGCAACAAGACCTCTGCAGTGTTTGTAACGGATATACTCTACACAAACATAAAGGGAACATATGATATAAGGCACCCACCAATGCATTTTGCCTGCAGTGACTCTGTTCCATGCACCAACTTAACACTCTCAGATATTGAGCTACTTCCAGCACTAGGAGATATAATGCTTGACCCTTTCTGCTGGAGTGCCTATGGAAATTCCCAGACACTAACCATTCCTCCAATCTCTTGCTTGCAAGAAGGCCTTCCTCAGTCCGTTCCAGGCAATGACATAGATCATTGCTGA 1425 0.4295 MRHSNILPLVFSLYFLTLFLPIQARHHYHTKHKHSHYHNSPEISPSPAPFSAPSSAPDEAPSPSPSFNENYHNASNFFDLRTFGAIGDGITDDTESFKMAWDTACQSESSVKTIIVPRGLSFIIQSTIFTGPCKGGLVLKVDGTLIPPDGPESWPKNNSRRQWLVFYRINGMSLEGSGVIDGRGAKWWDLPCKPHKGPNGTTSPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVDSIFITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNMTCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSRVTFSNIHMESVRNPIIIDQFYCLTKDCSNKTSAVFVTDILYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPALGDIMLDPFCWSAYGNSQTLTIPPISCLQEGLPQSVPGNDIDHC 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01315 474 SUPERFAMILY Pectin lyase-like 74 462 IPR011050 -
Cca02g01315 474 Pfam Glycosyl hydrolases family 28 108 427 IPR000743 GO:0004650|GO:0005975
Cca02g01315 474 SMART pbh1 321 342 IPR006626 -
Cca02g01315 474 SMART pbh1 350 371 IPR006626 -
Cca02g01315 474 SMART pbh1 291 311 IPR006626 -
Cca02g01315 474 SMART pbh1 268 289 IPR006626 -
Cca02g01315 474 SMART pbh1 218 267 IPR006626 -
Cca02g01315 474 MobiDBLite consensus disorder prediction 31 66 - -
Cca02g01315 474 ProSitePatterns Polygalacturonase active site. 298 311 IPR000743 GO:0004650|GO:0005975
Cca02g01315 474 Gene3D - 62 462 IPR012334 -
Cca02g01315 474 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 8 464 - -
Cca02g01315 474 PANTHER - 8 464 - -
Cca02g01315 474 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01315 Cca-Chr2 31468032 31470563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01315 77 474 Glycoside Hydrolase AT1G02460 72.070 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01315 - - gmx:100792285 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01315 02 31468032 31470563 Cca02g01315 02 31468032 31470563 ECH
Cca02g01315 02 31468032 31470563 Cca03g02738 03 48729413 48732069 ECH
Cca11g02809 11 55516281 55519723 Cca02g01315 02 31468032 31470563 ECH
Cca03g02738 03 48729413 48732069 Cca02g01315 02 31468032 31470563 PCT