Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01311 ATGGATGTTAAGAAAGCTGCATCCCCACTGCACCCGCAGCATGATCAAATCGATTCGCCTCTCAGAAAAGGTCCATGGACCGTTGACGAGGACACCATTCTAGTTAATTACATCACCACCCACGGCGAAGGTCACTGGAATTCCGTCGCACGATGTGCAGGTCTAAGGAGGAGTGGGAAAAGCTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGATGTGAGGCGTGGAAATATCACACTCCAAGAACAAATATTGATTCTGGACCTTCACTCTCGCTGGGGCAATAGGTGGTCGAAGATTGCTCAGCACTTGCCAGGAAGAACTGACAACGAAATAAAAAACTATTGGAGAACAAGAGTTATAAAACAGGCGAAGCAGCTCAAGTGCGATGTGAACAGCAAACAGTTCAGAGACACGTTGCGTTACGTGTGGATGCCCCGCTTGCTGGAGCGGGTTAAGCCCACATCTCACAACCAACTCGACCCAAACCCAACTGGAAACCCCAGCAACCACTCCACTGCCTCTTACTCGGACTCATCGTCCGTGGAGCTCCAACTTCCTTCCAATTCGCCTCACCATATGTGGACGGCTTTCGATAACATGGGCTTGGAACAGGGGACTCATGGCAACGGGGCTGACACGTTAGAGACTTTGTGGAATGACCAGAATATGTGGTTCTTGCAACTACTTTCTGACGACCTCCAAATAAAATACAATTCCCTTCCGTGA 732 0.4959 MDVKKAASPLHPQHDQIDSPLRKGPWTVDEDTILVNYITTHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDTLRYVWMPRLLERVKPTSHNQLDPNPTGNPSNHSTASYSDSSSVELQLPSNSPHHMWTAFDNMGLEQGTHGNGADTLETLWNDQNMWFLQLLSDDLQIKYNSLP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01311 243 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Cca02g01311 243 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Cca02g01311 243 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Cca02g01311 243 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Cca02g01311 243 Gene3D - 23 75 - -
Cca02g01311 243 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Cca02g01311 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Cca02g01311 243 PANTHER MYB TRANSCRIPTION FACTOR 13 233 - -
Cca02g01311 243 MobiDBLite consensus disorder prediction 1 23 - -
Cca02g01311 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Cca02g01311 243 MobiDBLite consensus disorder prediction 157 187 - -
Cca02g01311 243 SMART sant 75 123 IPR001005 -
Cca02g01311 243 SMART sant 22 72 IPR001005 -
Cca02g01311 243 CDD SANT 80 119 IPR001005 -
Cca02g01311 243 Gene3D - 80 121 - -
Cca02g01311 243 MobiDBLite consensus disorder prediction 155 187 - -
Cca02g01311 243 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 13 233 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca02g01311 243 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01311 Cca-Chr2 31367543 31369053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01311 21 229 MYB Transcription Factor Family AT1G48000 59.070 8.14e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01311 Myb_DNA-binding 9.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01311 K09422 - gmx:778065 334.339