Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01310 ATGGAGACGATGAGTGTTCAATTTATGAGATGTTTATCGGATAGTGATTCCTATGGAAGTGAAGAAGAGATGGCAATTAAGAAAGGGCCATGGACAGAGGAAGAAGATTCCGTTCTGATCAACTATGTCAACGTCCACGGTGAAGGTCACTGGAACTCCCTCGCTCGTTCTGCAGGTCTAAAGAGAACGGGCAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTCGACCTCCATTCTCGCTGGGGCAATCGGTGGGCGAAAATAGCAGAACAATTGCCCGGGAGAACAGACAATGAGATAAAGAACTATTGGAGGACGAGGGTGGTGAAGCAGGCTAAGCAACTCAAATGTGATGTAAACAGCAAACAGTTCAGAGACGCTGTGCGTTTCGTTTGGATGCCACGCCTTATGGAGCGGATTCAGGCTGcttcttcttcttcttcttcttcttcCTATGCCCACGACAAAACCAACTTGTGCAACACTAAGGCCCAAAATGAATCTAGTGGGGCCAAGCCCATTACCTTTTGTGACAACTCAGTTGTGGTTTCATCGTACTCATCAGGGGTTGGTCTCTCTGATACAAGTACAACTTCATCTTGCAATTTAATGGGTGATGGTAGCTTGTCAATGGATTGTGCAGAAAAGGGGTCCATGTCTTCCACCCTATGGCAGCAGTGGGACTACTCTGATCTCCAAGCATCTGAACCAGCCAATGGCTTTGGTGATGCAGACTTGTGGACCGATGAAAACATAAGCTTCTTGCAGCAGTATCTTGCTCATGATTTTTGA 846 0.4539 METMSVQFMRCLSDSDSYGSEEEMAIKKGPWTEEEDSVLINYVNVHGEGHWNSLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWAKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDAVRFVWMPRLMERIQAASSSSSSSSYAHDKTNLCNTKAQNESSGAKPITFCDNSVVVSSYSSGVGLSDTSTTSSCNLMGDGSLSMDCAEKGSMSSTLWQQWDYSDLQASEPANGFGDADLWTDENISFLQQYLAHDF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01310 281 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 243 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca02g01310 281 Gene3D - 25 81 - -
Cca02g01310 281 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Cca02g01310 281 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Cca02g01310 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Cca02g01310 281 CDD SANT 85 124 IPR001005 -
Cca02g01310 281 Gene3D - 85 126 - -
Cca02g01310 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Cca02g01310 281 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Cca02g01310 281 CDD SANT 30 75 IPR001005 -
Cca02g01310 281 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Cca02g01310 281 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Cca02g01310 281 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 16 243 - -
Cca02g01310 281 SMART sant 27 77 IPR001005 -
Cca02g01310 281 SMART sant 80 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01310 Cca-Chr2 31336247 31337264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01310 14 224 MYB Transcription Factor Family AT2G47190 55.399 1.80e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g01310 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01310 K09422 - gmx:100777932 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01310 02 31336247 31337264 Cca02g01310 02 31336247 31337264 ECH
Cca03g02744 03 48824463 48825647 Cca02g01310 02 31336247 31337264 PCT