Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01309 ATGGTTCCCAAATTCCATTTCCAAGTCATAATTATATTTCTTCTTTCATCATGGTTATGCATTACTTCTAGCTTGGATACACAGATAGGGGCCGATTTTGACAAATGGGTATCTTGGAACGTGAAGAATTATTATTATGAGAAAAAGAGCACTTTGGAAGCCAAACGGAACTTGGTTGCAGCTGGTCCAGATTTGAAGCTTAGGCAGGCTGAGAGTAACAGAATTAGGATAAGAGTTAGCCAAGATGGTGCTGGTGACTTCAAGACCATTACAGAAGCTCTTAATAGCGTTCCACTACGCAACACTAGGAGAGTTATAGTGTCCATCGCACCCGGTGTTTATAGGGAGAAGATCATGATCCCCAGAACATTGGCTTTTATCACGTTGTTAGGGGATGGTGGGGATCCACCAACCATTACTGGAAATGATACAGCGTCCTTCAACGGAAGAGATGGAACTCCGTTAGGAACATTCCAGAGTGCAACTGTTGCTGTGGATGCTTCCTATTTTGTGGCCATCAACATCAAATTCGAGAACAGTGCTCCGCATGTGATTGGAAGGAGGGGGGAACAAGGCGTGGCGCTTCGCATCTCAGGAACGAAAGCTGCATTTTACAATTGCACTTTCTATGGGGATCAAGACACTCTGTATGATCACAAAGGACTTCATTACTTCAACAACTGCTCTATTCAAGGTTCTGTTGATTTCATCTTCGGTTCCGGAAGGTCCCTTTACCAGAATTGCTATCTAAATTCCACAACCAAAAAAGTGGCTTCGATCACCGCTCAAAAGCGAACAAATTCGTCATTGGAGAGTGGATTCTCGTTCAAAAATTGCACAATAACAGGTAGTGGGCAAGTTTATCTTGGAAGAGCATGGGGAGATTATTCCAGAGTTGTATTCTCTTACACCTACATGGACAAGATAGTTCTACCCAAAGGATGGAGTGATTGGGGTGACCAAAATCGTGACTCAAGAGTATATTATGGAGAATACAAGTGTAGTGGGCCAGGAGCTAACTCGCCTGGAAGAGTGCCATGGGCCCGAGTGCTAACGGACGAAGAGGCCGAGCCTTTTATTGGGACTCAATTCATTGAAGGGGACACTTGGCTCATTAGCCCATAA 1125 0.4418 MVPKFHFQVIIIFLLSSWLCITSSLDTQIGADFDKWVSWNVKNYYYEKKSTLEAKRNLVAAGPDLKLRQAESNRIRIRVSQDGAGDFKTITEALNSVPLRNTRRVIVSIAPGVYREKIMIPRTLAFITLLGDGGDPPTITGNDTASFNGRDGTPLGTFQSATVAVDASYFVAINIKFENSAPHVIGRRGEQGVALRISGTKAAFYNCTFYGDQDTLYDHKGLHYFNNCSIQGSVDFIFGSGRSLYQNCYLNSTTKKVASITAQKRTNSSLESGFSFKNCTITGSGQVYLGRAWGDYSRVVFSYTYMDKIVLPKGWSDWGDQNRDSRVYYGEYKCSGPGANSPGRVPWARVLTDEEAEPFIGTQFIEGDTWLISP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01309 374 Gene3D - 72 373 IPR012334 -
Cca02g01309 374 PANTHER PECTINESTERASE 21 372 - -
Cca02g01309 374 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 21 372 - -
Cca02g01309 374 SUPERFAMILY Pectin lyase-like 76 371 IPR011050 -
Cca02g01309 374 Pfam Pectinesterase 77 368 IPR000070 GO:0030599|GO:0042545
Cca02g01309 374 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01309 Cca-Chr2 31320057 31321908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01309 77 371 Carbohydrate Esterase AT5G47500 46.465 8.81e-93 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01309 K01051 - pop:7455411 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01309 02 31320057 31321908 Cca02g01309 02 31320057 31321908 ECH
Cca03g02440 03 45450870 45455627 Cca02g01309 02 31320057 31321908 PCT